Cargando…

Metabolic-network-driven analysis of bacterial ecological strategies

BACKGROUND: The growth-rate of an organism is an important phenotypic trait, directly affecting its ability to survive in a given environment. Here we present the first large scale computational study of the association between ecological strategies and growth rate across 113 bacterial species, occu...

Descripción completa

Detalles Bibliográficos
Autores principales:	Freilich, Shiri, Kreimer, Anat, Borenstein, Elhanan, Yosef, Nir, Sharan, Roded, Gophna, Uri, Ruppin, Eytan
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718495/ https://www.ncbi.nlm.nih.gov/pubmed/19500338 http://dx.doi.org/10.1186/gb-2009-10-6-r61

Ejemplares similares

Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species
por: Freilich, Shiri, et al.
Publicado: (2010)

The large-scale organization of the bacterial network of ecological co-occurrence interactions
por: Freilich, Shiri, et al.
Publicado: (2010)

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes
por: Borenstein, Elhanan, et al.
Publicado: (2007)

NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation
por: Levy, Roie, et al.
Publicado: (2015)

Association between translation efficiency and horizontal gene transfer within microbial communities
por: Tuller, Tamir, et al.
Publicado: (2011)

A complex-centric view of protein network evolution
por: Yosef, Nir, et al.
Publicado: (2009)

Network-Free Inference of Knockout Effects in Yeast
por: Peleg, Tal, et al.
Publicado: (2010)

Maximal Sum of Metabolic Exchange Fluxes Outperforms Biomass Yield as a Predictor of Growth Rate of Microorganisms
por: Zarecki, Raphy, et al.
Publicado: (2014)

A genome-wide screen for essential yeast genes that affect telomere length maintenance
por: Ungar, Lior, et al.
Publicado: (2009)

A Novel HMM-Based Method for Detecting Enriched Transcription Factor Binding Sites Reveals RUNX3 as a Potential Target in Pancreatic Cancer Biology
por: Levkovitz, Liron, et al.
Publicado: (2010)

Toward accurate reconstruction of functional protein networks
por: Yosef, Nir, et al.
Publicado: (2009)

A genome-scale computational study of the interplay between transcriptional regulation and metabolism
por: Shlomi, Tomer, et al.
Publicado: (2007)

Genetic interactions in yeast: is robustness going bust?
por: Kupiec, Martin, et al.
Publicado: (2007)

Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect
por: Shlomi, Tomer, et al.
Publicado: (2011)

Correction: Transcriptional Regulation by CHIP/LDB Complexes
por: Bronstein, Revital, et al.
Publicado: (2011)

Transcriptional Regulation by CHIP/LDB Complexes
por: Bronstein, Revital, et al.
Publicado: (2010)

Increased MicroRNA Activity in Human Cancers
por: Israel, Ariel, et al.
Publicado: (2009)

QPath: a method for querying pathways in a protein-protein interaction network
por: Shlomi, Tomer, et al.
Publicado: (2006)

PREDICT: a method for inferring novel drug indications with application to personalized medicine
por: Gottlieb, Assaf, et al.
Publicado: (2011)

Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks
por: Magger, Oded, et al.
Publicado: (2012)

A Novel Nutritional Predictor Links Microbial Fastidiousness with Lowered Ubiquity, Growth Rate, and Cooperativeness
por: Zarecki, Raphy, et al.
Publicado: (2014)

Met Kinetic Signature Derived from the Response to HGF/SF in a Cellular Model Predicts Breast Cancer Patient Survival
por: Stein, Gideon Y., et al.
Publicado: (2012)

A systems-level approach to mapping the telomere length maintenance gene circuitry
por: Shachar, Rafi, et al.
Publicado: (2008)

A direct comparison of protein interaction confidence assignment schemes
por: Suthram, Silpa, et al.
Publicado: (2006)

Gene Expression in the Rodent Brain is Associated with Its Regional Connectivity
por: Wolf, Lior, et al.
Publicado: (2011)

Associating Genes and Protein Complexes with Disease via Network Propagation
por: Vanunu, Oron, et al.
Publicado: (2010)

Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages
por: Waldman, Yedael Y., et al.
Publicado: (2010)

INDI: a computational framework for inferring drug interactions and their associated recommendations
por: Gottlieb, Assaf, et al.
Publicado: (2012)

A method for inferring medical diagnoses from patient similarities
por: Gottlieb, Assaf, et al.
Publicado: (2013)

Metabolic model-based analysis of the emergence of bacterial cross-feeding via extensive gene loss
por: McNally, Colin P., et al.
Publicado: (2018)

Integrating Transcriptomics with Metabolic Modeling Predicts Biomarkers and Drug Targets for Alzheimer's Disease
por: Stempler, Shiri, et al.
Publicado: (2014)

A data-driven approach for predicting the impact of drugs on the human microbiome
por: Algavi, Yadid M., et al.
Publicado: (2023)

Meta‐analysis of massively parallel reporter assays enables prediction of regulatory function across cell types
por: Kreimer, Anat, et al.
Publicado: (2019)

Harnessing the landscape of microbial culture media to predict new organism–media pairings
por: Oberhardt, Matthew A., et al.
Publicado: (2015)

Evolutionary Conservation of Bacterial Essential Metabolic Genes across All Bacterial Culture Media
por: Ish-Am, Oren, et al.
Publicado: (2015)

Analyzing Gene Expression from Whole Tissue vs. Different Cell Types Reveals the Central Role of Neurons in Predicting Severity of Alzheimer’s Disease
por: Stempler, Shiri, et al.
Publicado: (2012)

Correction: Analyzing Gene Expression from Whole Tissue vs. Different Cell Types Reveals the Central Role of Neurons in Predicting Severity of Alzheimer’s Disease
por: Stempler, Shiri, et al.
Publicado: (2012)

Data-Driven Metabolic Pathway Compositions Enhance Cancer Survival Prediction
por: Auslander, Noam, et al.
Publicado: (2016)

Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations
por: Eilam, Omer, et al.
Publicado: (2014)

Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm
por: Mayrose, Itay, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_e7c0gf5e929nvm4v18vi2mgr1r