MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations

Valuable binding-site annotation data are stored in databases. However, several types of errors can, and do, occur in the process of manually incorporating annotation data from the scientific literature into these databases. Here, we introduce MotifAdjuster , a tool that helps to detect these errors...

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Detalles Bibliográficos
Autores principales: Keilwagen, Jens, Baumbach, Jan, Kohl, Thomas A, Grosse, Ivo
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718512/
https://www.ncbi.nlm.nih.gov/pubmed/19409082
http://dx.doi.org/10.1186/gb-2009-10-5-r46
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author Keilwagen, Jens
Baumbach, Jan
Kohl, Thomas A
Grosse, Ivo
author_facet Keilwagen, Jens
Baumbach, Jan
Kohl, Thomas A
Grosse, Ivo
author_sort Keilwagen, Jens
collection PubMed
description Valuable binding-site annotation data are stored in databases. However, several types of errors can, and do, occur in the process of manually incorporating annotation data from the scientific literature into these databases. Here, we introduce MotifAdjuster , a tool that helps to detect these errors, and we demonstrate its efficacy on public data sets.
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spelling pubmed-27185122009-07-30 MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations Keilwagen, Jens Baumbach, Jan Kohl, Thomas A Grosse, Ivo Genome Biol Software Valuable binding-site annotation data are stored in databases. However, several types of errors can, and do, occur in the process of manually incorporating annotation data from the scientific literature into these databases. Here, we introduce MotifAdjuster , a tool that helps to detect these errors, and we demonstrate its efficacy on public data sets. BioMed Central 2009 2009-05-01 /pmc/articles/PMC2718512/ /pubmed/19409082 http://dx.doi.org/10.1186/gb-2009-10-5-r46 Text en Copyright © 2009 Keilwagen et al., licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Keilwagen, Jens
Baumbach, Jan
Kohl, Thomas A
Grosse, Ivo
MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations
title MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations
title_full MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations
title_fullStr MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations
title_full_unstemmed MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations
title_short MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations
title_sort motifadjuster: a tool for computational reassessment of transcription factor binding site annotations
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718512/
https://www.ncbi.nlm.nih.gov/pubmed/19409082
http://dx.doi.org/10.1186/gb-2009-10-5-r46
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