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A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests

BACKGROUND: The detection of true significant cases under multiple testing is becoming a fundamental issue when analyzing high-dimensional biological data. Unfortunately, known multitest adjustments reduce their statistical power as the number of tests increase. We propose a new multitest adjustment...

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Detalles Bibliográficos
Autores principales: Carvajal-Rodríguez, Antonio, de Uña-Alvarez, Jacobo, Rolán-Alvarez, Emilio
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719628/
https://www.ncbi.nlm.nih.gov/pubmed/19586526
http://dx.doi.org/10.1186/1471-2105-10-209
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author Carvajal-Rodríguez, Antonio
de Uña-Alvarez, Jacobo
Rolán-Alvarez, Emilio
author_facet Carvajal-Rodríguez, Antonio
de Uña-Alvarez, Jacobo
Rolán-Alvarez, Emilio
author_sort Carvajal-Rodríguez, Antonio
collection PubMed
description BACKGROUND: The detection of true significant cases under multiple testing is becoming a fundamental issue when analyzing high-dimensional biological data. Unfortunately, known multitest adjustments reduce their statistical power as the number of tests increase. We propose a new multitest adjustment, based on a sequential goodness of fit metatest (SGoF), which increases its statistical power with the number of tests. The method is compared with Bonferroni and FDR-based alternatives by simulating a multitest context via two different kinds of tests: 1) one-sample t-test, and 2) homogeneity G-test. RESULTS: It is shown that SGoF behaves especially well with small sample sizes when 1) the alternative hypothesis is weakly to moderately deviated from the null model, 2) there are widespread effects through the family of tests, and 3) the number of tests is large. CONCLUSION: Therefore, SGoF should become an important tool for multitest adjustment when working with high-dimensional biological data.
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spelling pubmed-27196282009-08-01 A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests Carvajal-Rodríguez, Antonio de Uña-Alvarez, Jacobo Rolán-Alvarez, Emilio BMC Bioinformatics Methodology Article BACKGROUND: The detection of true significant cases under multiple testing is becoming a fundamental issue when analyzing high-dimensional biological data. Unfortunately, known multitest adjustments reduce their statistical power as the number of tests increase. We propose a new multitest adjustment, based on a sequential goodness of fit metatest (SGoF), which increases its statistical power with the number of tests. The method is compared with Bonferroni and FDR-based alternatives by simulating a multitest context via two different kinds of tests: 1) one-sample t-test, and 2) homogeneity G-test. RESULTS: It is shown that SGoF behaves especially well with small sample sizes when 1) the alternative hypothesis is weakly to moderately deviated from the null model, 2) there are widespread effects through the family of tests, and 3) the number of tests is large. CONCLUSION: Therefore, SGoF should become an important tool for multitest adjustment when working with high-dimensional biological data. BioMed Central 2009-07-08 /pmc/articles/PMC2719628/ /pubmed/19586526 http://dx.doi.org/10.1186/1471-2105-10-209 Text en Copyright © 2009 Carvajal-Rodríguez et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methodology Article
Carvajal-Rodríguez, Antonio
de Uña-Alvarez, Jacobo
Rolán-Alvarez, Emilio
A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
title A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
title_full A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
title_fullStr A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
title_full_unstemmed A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
title_short A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
title_sort new multitest correction (sgof) that increases its statistical power when increasing the number of tests
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719628/
https://www.ncbi.nlm.nih.gov/pubmed/19586526
http://dx.doi.org/10.1186/1471-2105-10-209
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