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A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
BACKGROUND: The detection of true significant cases under multiple testing is becoming a fundamental issue when analyzing high-dimensional biological data. Unfortunately, known multitest adjustments reduce their statistical power as the number of tests increase. We propose a new multitest adjustment...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2009
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719628/ https://www.ncbi.nlm.nih.gov/pubmed/19586526 http://dx.doi.org/10.1186/1471-2105-10-209 |
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author | Carvajal-Rodríguez, Antonio de Uña-Alvarez, Jacobo Rolán-Alvarez, Emilio |
author_facet | Carvajal-Rodríguez, Antonio de Uña-Alvarez, Jacobo Rolán-Alvarez, Emilio |
author_sort | Carvajal-Rodríguez, Antonio |
collection | PubMed |
description | BACKGROUND: The detection of true significant cases under multiple testing is becoming a fundamental issue when analyzing high-dimensional biological data. Unfortunately, known multitest adjustments reduce their statistical power as the number of tests increase. We propose a new multitest adjustment, based on a sequential goodness of fit metatest (SGoF), which increases its statistical power with the number of tests. The method is compared with Bonferroni and FDR-based alternatives by simulating a multitest context via two different kinds of tests: 1) one-sample t-test, and 2) homogeneity G-test. RESULTS: It is shown that SGoF behaves especially well with small sample sizes when 1) the alternative hypothesis is weakly to moderately deviated from the null model, 2) there are widespread effects through the family of tests, and 3) the number of tests is large. CONCLUSION: Therefore, SGoF should become an important tool for multitest adjustment when working with high-dimensional biological data. |
format | Text |
id | pubmed-2719628 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-27196282009-08-01 A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests Carvajal-Rodríguez, Antonio de Uña-Alvarez, Jacobo Rolán-Alvarez, Emilio BMC Bioinformatics Methodology Article BACKGROUND: The detection of true significant cases under multiple testing is becoming a fundamental issue when analyzing high-dimensional biological data. Unfortunately, known multitest adjustments reduce their statistical power as the number of tests increase. We propose a new multitest adjustment, based on a sequential goodness of fit metatest (SGoF), which increases its statistical power with the number of tests. The method is compared with Bonferroni and FDR-based alternatives by simulating a multitest context via two different kinds of tests: 1) one-sample t-test, and 2) homogeneity G-test. RESULTS: It is shown that SGoF behaves especially well with small sample sizes when 1) the alternative hypothesis is weakly to moderately deviated from the null model, 2) there are widespread effects through the family of tests, and 3) the number of tests is large. CONCLUSION: Therefore, SGoF should become an important tool for multitest adjustment when working with high-dimensional biological data. BioMed Central 2009-07-08 /pmc/articles/PMC2719628/ /pubmed/19586526 http://dx.doi.org/10.1186/1471-2105-10-209 Text en Copyright © 2009 Carvajal-Rodríguez et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methodology Article Carvajal-Rodríguez, Antonio de Uña-Alvarez, Jacobo Rolán-Alvarez, Emilio A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests |
title | A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests |
title_full | A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests |
title_fullStr | A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests |
title_full_unstemmed | A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests |
title_short | A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests |
title_sort | new multitest correction (sgof) that increases its statistical power when increasing the number of tests |
topic | Methodology Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2719628/ https://www.ncbi.nlm.nih.gov/pubmed/19586526 http://dx.doi.org/10.1186/1471-2105-10-209 |
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