Cargando…

Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs

BACKGROUND: Apicomplexan parasites are causative agents of various diseases including malaria and have been targets of extensive genomic sequencing. We generated 5'-EST collections for six apicomplexa parasites using our full-length oligo-capping cDNA library method. To improve upon the current...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wakaguri, Hiroyuki, Suzuki, Yutaka, Sasaki, Masahide, Sugano, Sumio, Watanabe, Junichi
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2722674/ https://www.ncbi.nlm.nih.gov/pubmed/19602295 http://dx.doi.org/10.1186/1471-2164-10-312

Ejemplares similares

Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs
por: Watanabe, Junichi, et al.
Publicado: (2007)

Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009
por: Wakaguri, Hiroyuki, et al.
Publicado: (2009)

Construction of mate pair full-length cDNAs libraries and characterization of transcriptional start sites and termination sites
por: Matsumoto, Kyoko, et al.
Publicado: (2014)

Full-parasites: database of full-length cDNAs of apicomplexa parasites, 2010 update
por: Tuda, Josef, et al.
Publicado: (2011)

H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational
por: Takeda, Jun-ichi, et al.
Publicado: (2007)

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs
por: Takeda, Jun-ichi, et al.
Publicado: (2008)

Identification and Functional Analyses of 11 769 Full-length Human cDNAs Focused on Alternative Splicing
por: Wakamatsu, Ai, et al.
Publicado: (2009)

Antisense transcripts with rice full-length cDNAs
por: Osato, Naoki, et al.
Publicado: (2004)

Collection of Macaca fascicularis cDNAs derived from bone marrow, kidney, liver, pancreas, spleen, and thymus
por: Osada, Naoki, et al.
Publicado: (2009)

Prediction of unidentified human genes on the basis of sequence similarity to novel cDNAs from cynomolgus monkey brain
por: Osada, Naoki, et al.
Publicado: (2002)

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs
por: Takeda, Jun-ichi, et al.
Publicado: (2006)

Cynomolgus monkey testicular cDNAs for discovery of novel human genes in the human genome sequence
por: Osada, Naoki, et al.
Publicado: (2002)

cDNA2Genome: A tool for mapping and annotating cDNAs
por: del Val, Coral, et al.
Publicado: (2003)

Sequencing, Mapping, and Analysis of 27,455 Maize Full-Length cDNAs
por: Soderlund, Carol, et al.
Publicado: (2009)

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila
por: Taji, Teruaki, et al.
Publicado: (2008)

Transcript Annotation in FANTOM3: Mouse Gene Catalog Based on Physical cDNAs
por: Maeda, Norihiro, et al.
Publicado: (2006)

Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics
por: Yamashita, Riu, et al.
Publicado: (2008)

Efficient Plant Gene Identification Based on Interspecies Mapping of Full-Length cDNAs
por: Amano, Naoki, et al.
Publicado: (2010)

Functional and expression analyses of transcripts based on full-length cDNAs of Sorghum bicolor
por: Shimada, Setsuko, et al.
Publicado: (2015)

Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis
por: Lin, Lin, et al.
Publicado: (2019)

A Comprehensive Software Suite for the Analysis of cDNAs
por: Arakawa, Kazuharu, et al.
Publicado: (2005)

TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences
por: Min, Xiang Jia, et al.
Publicado: (2005)

Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis
por: Caldwell, Randolph B, et al.
Publicado: (2005)

Computational Analysis of Full-length cDNAs Reveals Frequent Coupling Between Transcriptional and Splicing Programs
por: Chern, Tzu-Ming, et al.
Publicado: (2008)

Insights into metazoan evolution from alvinella pompejana cDNAs
por: Gagnière, Nicolas, et al.
Publicado: (2010)

Engineering Infectious cDNAs of Coronavirus as Bacterial Artificial Chromosomes
por: Almazán, Fernando, et al.
Publicado: (2014)

Engineering Infectious cDNAs of Coronavirus as Bacterial Artificial Chromosomes
por: Almazán, Fernando, et al.
Publicado: (2007)

Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs
por: Oduru, Sreedhar, et al.
Publicado: (2003)

Identification and Characterization of Full-Length cDNAs in Channel Catfish (Ictalurus punctatus) and Blue Catfish (Ictalurus furcatus)
por: Chen, Fei, et al.
Publicado: (2010)

CAFTAN: a tool for fast mapping, and quality assessment of cDNAs
por: del Val, Coral, et al.
Publicado: (2006)

PCR-based generation of shRNA libraries from cDNAs
por: Du, Cheng, et al.
Publicado: (2006)

Pyrosequencing of Mytilus galloprovincialis cDNAs: Tissue-Specific Expression Patterns
por: Craft, John A., et al.
Publicado: (2010)

Development of Full-Length cDNAs from Chinese Cabbage (Brassica rapa Subsp. pekinensis) and Identification of Marker Genes for Defence Response
por: Abe, Hiroshi, et al.
Publicado: (2011)

Analysis of Multiple Occurrences of Alternative Splicing Events in Arabidopsis thaliana Using Novel Sequenced Full-Length cDNAs
por: Iida, Kei, et al.
Publicado: (2009)

Large-Scale Collection and Analysis of Full-Length cDNAs from Brachypodium distachyon and Integration with Pooideae Sequence Resources
por: Mochida, Keiichi, et al.
Publicado: (2013)

Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples
por: Bragalini, Claudia, et al.
Publicado: (2014)

A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis
por: Gilchrist, Michael J., et al.
Publicado: (2015)

Cloning and characterization of deer mouse (Peromyscus maniculatus) cytokine and chemokine cDNAs
por: Schountz, Tony, et al.
Publicado: (2004)

Lysozyme and Mucin cDNAs as Tools for the Study of Serous and Mucous Cell Differentiation
por: Basbaum, Carol, et al.
Publicado: (1992)

Collection and Comparative Analysis of 1888 Full-length cDNAs from Wild Rice Oryza rufipogon Griff. W1943
por: Lu, Tingting, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_ulu46fqh9lonamiv2nun2kd73s