Reordering contigs of draft genomes using the Mauve Aligner

Summary: Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerfu...

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Detalles Bibliográficos
Autores principales: Rissman, Anna I., Mau, Bob, Biehl, Bryan S., Darling, Aaron E., Glasner, Jeremy D., Perna, Nicole T.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723005/
https://www.ncbi.nlm.nih.gov/pubmed/19515959
http://dx.doi.org/10.1093/bioinformatics/btp356
Descripción
Sumario:Summary: Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results. Availability: The software is available for download at http://gel.ahabs.wisc.edu/mauve. Contact: rissman@wisc.edu Supplementary information: Supplementary data are available at Bioinformatics online and http://gel.ahabs.wisc.edu

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