Reordering contigs of draft genomes using the Mauve Aligner

Summary: Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerfu...

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Detalles Bibliográficos
Autores principales: Rissman, Anna I., Mau, Bob, Biehl, Bryan S., Darling, Aaron E., Glasner, Jeremy D., Perna, Nicole T.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723005/
https://www.ncbi.nlm.nih.gov/pubmed/19515959
http://dx.doi.org/10.1093/bioinformatics/btp356
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author Rissman, Anna I.
Mau, Bob
Biehl, Bryan S.
Darling, Aaron E.
Glasner, Jeremy D.
Perna, Nicole T.
author_facet Rissman, Anna I.
Mau, Bob
Biehl, Bryan S.
Darling, Aaron E.
Glasner, Jeremy D.
Perna, Nicole T.
author_sort Rissman, Anna I.
collection PubMed
description Summary: Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results. Availability: The software is available for download at http://gel.ahabs.wisc.edu/mauve. Contact: rissman@wisc.edu Supplementary information: Supplementary data are available at Bioinformatics online and http://gel.ahabs.wisc.edu
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spelling pubmed-27230052009-08-07 Reordering contigs of draft genomes using the Mauve Aligner Rissman, Anna I. Mau, Bob Biehl, Bryan S. Darling, Aaron E. Glasner, Jeremy D. Perna, Nicole T. Bioinformatics Applications Note Summary: Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results. Availability: The software is available for download at http://gel.ahabs.wisc.edu/mauve. Contact: rissman@wisc.edu Supplementary information: Supplementary data are available at Bioinformatics online and http://gel.ahabs.wisc.edu Oxford University Press 2009-08-15 2009-06-10 /pmc/articles/PMC2723005/ /pubmed/19515959 http://dx.doi.org/10.1093/bioinformatics/btp356 Text en http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Rissman, Anna I.
Mau, Bob
Biehl, Bryan S.
Darling, Aaron E.
Glasner, Jeremy D.
Perna, Nicole T.
Reordering contigs of draft genomes using the Mauve Aligner
title Reordering contigs of draft genomes using the Mauve Aligner
title_full Reordering contigs of draft genomes using the Mauve Aligner
title_fullStr Reordering contigs of draft genomes using the Mauve Aligner
title_full_unstemmed Reordering contigs of draft genomes using the Mauve Aligner
title_short Reordering contigs of draft genomes using the Mauve Aligner
title_sort reordering contigs of draft genomes using the mauve aligner
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723005/
https://www.ncbi.nlm.nih.gov/pubmed/19515959
http://dx.doi.org/10.1093/bioinformatics/btp356
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