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Use of network analysis to capture key traits affecting tomato organoleptic quality
The long-term objective of tomato breeders is to identify metabolites that contribute to defining the target flavour and to design strategies to enhance it. This paper reports the results of network analysis, based on metabolic phenotypic and sensory data, to highlight important relationships among...
Autores principales: | , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2724691/ https://www.ncbi.nlm.nih.gov/pubmed/19516072 http://dx.doi.org/10.1093/jxb/erp177 |
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author | Carli, Paola Arima, Serena Fogliano, Vincenzo Tardella, Luca Frusciante, Luigi Ercolano, Maria R. |
author_facet | Carli, Paola Arima, Serena Fogliano, Vincenzo Tardella, Luca Frusciante, Luigi Ercolano, Maria R. |
author_sort | Carli, Paola |
collection | PubMed |
description | The long-term objective of tomato breeders is to identify metabolites that contribute to defining the target flavour and to design strategies to enhance it. This paper reports the results of network analysis, based on metabolic phenotypic and sensory data, to highlight important relationships among such traits. This tool allowed a reduction in data set complexity, building a network consisting of 35 nodes and 74 links corresponding to the 74 significant (positive or negative) correlations among the variables studied. A number of links among traits contributing to fruit organoleptic quality and to the perception of sensory attributes were identified. Modular partitioning of the characteristics involved in fruit organoleptic perception captured the essential fruit parameters that regulate interactions among different class traits. The main feature of the network was the presence of three nodes interconnected among themselves (dry matter, pH, and °Brix) and with other traits, and nodes with widely different linkage degrees. Identification of strong associations between some metabolic and sensory traits, such as citric acid with tomato smell, glycine with tomato smell, and granulosity with dry matter, suggests a basis for more targeted investigations in the future. |
format | Text |
id | pubmed-2724691 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-27246912009-08-20 Use of network analysis to capture key traits affecting tomato organoleptic quality Carli, Paola Arima, Serena Fogliano, Vincenzo Tardella, Luca Frusciante, Luigi Ercolano, Maria R. J Exp Bot Research Papers The long-term objective of tomato breeders is to identify metabolites that contribute to defining the target flavour and to design strategies to enhance it. This paper reports the results of network analysis, based on metabolic phenotypic and sensory data, to highlight important relationships among such traits. This tool allowed a reduction in data set complexity, building a network consisting of 35 nodes and 74 links corresponding to the 74 significant (positive or negative) correlations among the variables studied. A number of links among traits contributing to fruit organoleptic quality and to the perception of sensory attributes were identified. Modular partitioning of the characteristics involved in fruit organoleptic perception captured the essential fruit parameters that regulate interactions among different class traits. The main feature of the network was the presence of three nodes interconnected among themselves (dry matter, pH, and °Brix) and with other traits, and nodes with widely different linkage degrees. Identification of strong associations between some metabolic and sensory traits, such as citric acid with tomato smell, glycine with tomato smell, and granulosity with dry matter, suggests a basis for more targeted investigations in the future. Oxford University Press 2009-08 2009-06-10 /pmc/articles/PMC2724691/ /pubmed/19516072 http://dx.doi.org/10.1093/jxb/erp177 Text en © 2009 The Author(s). This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. This paper is available online free of all access charges (see http://jxb.oxfordjournals.org/open_access.html for further details) |
spellingShingle | Research Papers Carli, Paola Arima, Serena Fogliano, Vincenzo Tardella, Luca Frusciante, Luigi Ercolano, Maria R. Use of network analysis to capture key traits affecting tomato organoleptic quality |
title | Use of network analysis to capture key traits affecting tomato organoleptic quality |
title_full | Use of network analysis to capture key traits affecting tomato organoleptic quality |
title_fullStr | Use of network analysis to capture key traits affecting tomato organoleptic quality |
title_full_unstemmed | Use of network analysis to capture key traits affecting tomato organoleptic quality |
title_short | Use of network analysis to capture key traits affecting tomato organoleptic quality |
title_sort | use of network analysis to capture key traits affecting tomato organoleptic quality |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2724691/ https://www.ncbi.nlm.nih.gov/pubmed/19516072 http://dx.doi.org/10.1093/jxb/erp177 |
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