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Testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells

Until recently few studies of amino acid racemization of fossil bivalves and gastropods collected from river terrace deposits in Europe were based on the analysis of the intra-crystalline fraction. Instead they were based on the epimerization (racemization) of a single amino acid, isoleucine, and it...

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Autores principales: Penkman, K.E.H., Preece, R.C., Keen, D.H., Maddy, D., Schreve, D.C., Collins, M.J.
Formato: Texto
Lenguaje:English
Publicado: Pergamon Press 2007
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2727059/
https://www.ncbi.nlm.nih.gov/pubmed/19684880
http://dx.doi.org/10.1016/j.quascirev.2007.06.034
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author Penkman, K.E.H.
Preece, R.C.
Keen, D.H.
Maddy, D.
Schreve, D.C.
Collins, M.J.
author_facet Penkman, K.E.H.
Preece, R.C.
Keen, D.H.
Maddy, D.
Schreve, D.C.
Collins, M.J.
author_sort Penkman, K.E.H.
collection PubMed
description Until recently few studies of amino acid racemization of fossil bivalves and gastropods collected from river terrace deposits in Europe were based on the analysis of the intra-crystalline fraction. Instead they were based on the epimerization (racemization) of a single amino acid, isoleucine, and its inter-conversion to alloisoleucine. This paper presents data from the analysis of the intra-crystalline fraction of the shells, using a preparation technique of sample bleaching to remove the leachable matrix, thus leaving a component that exhibits closed-system behaviour. Reverse-phase HPLC separation with fluorescence detection allows the interpretation of four amino acids in detail: aspartic acid, glutamic acid, alanine and valine. The intra-crystalline fraction offers greater potential for improved resolution, especially when combined with the analysis of multiple amino acid d/l values, which racemize at different rates. This is explored using three species of freshwater gastropods (Bithynia tentaculata and troschelii, Valvata piscinalis) and the bivalve Corbicula. Sites of different ages within the Lower Thames river terrace sequence are used as a stratigraphical framework, with samples from other southern UK sites providing supplementary evidence. The results indicate better resolution using the intra-crystalline fraction over that obtained using unbleached shells, with differentiation possible at sites of up to MIS 7 age. However, for older sites, although values are always higher, the separation is less successful. A species effect has been identified between the gastropod shells. Despite the analysis of intra-crystalline protein, amino acid data from Corbicula remain problematical. Preliminary data on the opercula from Bithynia indicate that better resolution is possible, particularly at older sites.
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spelling pubmed-27270592009-08-14 Testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells Penkman, K.E.H. Preece, R.C. Keen, D.H. Maddy, D. Schreve, D.C. Collins, M.J. Quat Sci Rev Article Until recently few studies of amino acid racemization of fossil bivalves and gastropods collected from river terrace deposits in Europe were based on the analysis of the intra-crystalline fraction. Instead they were based on the epimerization (racemization) of a single amino acid, isoleucine, and its inter-conversion to alloisoleucine. This paper presents data from the analysis of the intra-crystalline fraction of the shells, using a preparation technique of sample bleaching to remove the leachable matrix, thus leaving a component that exhibits closed-system behaviour. Reverse-phase HPLC separation with fluorescence detection allows the interpretation of four amino acids in detail: aspartic acid, glutamic acid, alanine and valine. The intra-crystalline fraction offers greater potential for improved resolution, especially when combined with the analysis of multiple amino acid d/l values, which racemize at different rates. This is explored using three species of freshwater gastropods (Bithynia tentaculata and troschelii, Valvata piscinalis) and the bivalve Corbicula. Sites of different ages within the Lower Thames river terrace sequence are used as a stratigraphical framework, with samples from other southern UK sites providing supplementary evidence. The results indicate better resolution using the intra-crystalline fraction over that obtained using unbleached shells, with differentiation possible at sites of up to MIS 7 age. However, for older sites, although values are always higher, the separation is less successful. A species effect has been identified between the gastropod shells. Despite the analysis of intra-crystalline protein, amino acid data from Corbicula remain problematical. Preliminary data on the opercula from Bithynia indicate that better resolution is possible, particularly at older sites. Pergamon Press 2007-11 /pmc/articles/PMC2727059/ /pubmed/19684880 http://dx.doi.org/10.1016/j.quascirev.2007.06.034 Text en © 2007 Elsevier Ltd. https://creativecommons.org/licenses/by/3.0/ Open Access under CC BY 3.0 (https://creativecommons.org/licenses/by/3.0/) license
spellingShingle Article
Penkman, K.E.H.
Preece, R.C.
Keen, D.H.
Maddy, D.
Schreve, D.C.
Collins, M.J.
Testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells
title Testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells
title_full Testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells
title_fullStr Testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells
title_full_unstemmed Testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells
title_short Testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells
title_sort testing the aminostratigraphy of fluvial archives: the evidence from intra-crystalline proteins within freshwater shells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2727059/
https://www.ncbi.nlm.nih.gov/pubmed/19684880
http://dx.doi.org/10.1016/j.quascirev.2007.06.034
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