Cargando…

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

BACKGROUND: Transcription initiation is a key component in the regulation of gene expression. mRNA 5' full-length sequencing techniques have enhanced our understanding of mammalian transcription start sites (TSSs), revealing different initiation patterns on a genomic scale. RESULTS: To identify...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rach, Elizabeth A, Yuan, Hsiang-Yu, Majoros, William H, Tomancak, Pavel, Ohler, Uwe
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2728527/ https://www.ncbi.nlm.nih.gov/pubmed/19589141 http://dx.doi.org/10.1186/gb-2009-10-7-r73

Ejemplares similares

Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction
por: Ohler, Uwe
Publicado: (2006)

Mapping the complexity of transcription control in higher eukaryotes
por: Tomancak, Pavel, et al.
Publicado: (2010)

The Drosophila Translational Control Element (TCE) Is Required for High-Level Transcription of Many Genes That Are Specifically Expressed in Testes
por: Katzenberger, Rebeccah J., et al.
Publicado: (2012)

Transcription Start Site Evolution in Drosophila
por: Main, Bradley J., et al.
Publicado: (2013)

Strategies for Identifying RNA Splicing Regulatory Motifs and Predicting Alternative Splicing Events
por: Holste, Dirk, et al.
Publicado: (2008)

Alternative translation start sites are conserved in eukaryotic genomes
por: Bazykin, Georgii A., et al.
Publicado: (2011)

Recognition of Unknown Conserved Alternatively Spliced Exons
por: Ohler, Uwe, et al.
Publicado: (2005)

Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields
por: Pruteanu-Malinici, Iulian, et al.
Publicado: (2013)

SEASTAR: systematic evaluation of alternative transcription start sites in RNA
por: Qin, Zhiyi, et al.
Publicado: (2018)

Spatial preferences of microRNA targets in 3' untranslated regions
por: Majoros, William H, et al.
Publicado: (2007)

Modeling the Evolution of Regulatory Elements by Simultaneous Detection and Alignment with Phylogenetic Pair HMMs
por: Majoros, William H., et al.
Publicado: (2010)

Regulating retrotransposon activity through the use of alternative transcription start sites
por: Persson, Jenna, et al.
Publicado: (2016)

Alternative Transcription Start Site Usage and Functional Implications in Pathogenic Fungi
por: Dang, Thi Tuong Vi, et al.
Publicado: (2022)

Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach
por: Magalhães, Tiago R, et al.
Publicado: (2007)

The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site
por: Tharakaraman, Kannan, et al.
Publicado: (2008)

Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster
por: Meers, Michael P., et al.
Publicado: (2018)

Conservation of Transcription Start Sites within Genes across a Bacterial Genus
por: Shao, Wenjun, et al.
Publicado: (2014)

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021
por: Schlüter, Jan-Philip, et al.
Publicado: (2013)

Alternative transcription start sites contribute to acute-stress-induced transcriptome response in human skeletal muscle
por: Makhnovskii, Pavel A., et al.
Publicado: (2022)

Transcription Initiation Patterns Indicate Divergent Strategies for Gene Regulation at the Chromatin Level
por: Rach, Elizabeth A., et al.
Publicado: (2011)

Comprehensive analysis of the base composition around the transcription start site in Metazoa
por: Aerts, Stein, et al.
Publicado: (2004)

SNP and indel frequencies at transcription start sites and at canonical and alternative translation initiation sites in the human genome
por: Neininger, Kerstin, et al.
Publicado: (2019)

MicroRNA Target Site Identification by Integrating Sequence and Binding Information
por: Majoros, William H., et al.
Publicado: (2013)

Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues
por: Reyes, Alejandro, et al.
Publicado: (2018)

Pervasive isoform‐specific translational regulation via alternative transcription start sites in mammals
por: Wang, Xi, et al.
Publicado: (2016)

A paired-end sequencing strategy to map the complex landscape of transcription initiation
por: Ni, Ting, et al.
Publicado: (2010)

The possible functions of duplicated ets (GGAA) motifs located near transcription start sites of various human genes
por: Uchiumi, Fumiaki, et al.
Publicado: (2011)

Optimized mixed Markov models for motif identification
por: Huang, Weichun, et al.
Publicado: (2006)

GC-compositional strand bias around transcription start sites in plants and fungi
por: Fujimori, Shigeo, et al.
Publicado: (2005)

Evidence-ranked motif identification
por: Georgiev, Stoyan, et al.
Publicado: (2010)

Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs
por: Wan, Jun, et al.
Publicado: (2013)

Evolutionary conservation of sequence motifs at sites of protein modification
por: Li, Shuang, et al.
Publicado: (2023)

Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules
por: Acevedo-Luna, Natalia, et al.
Publicado: (2016)

In Vivo RNAi Rescue in Drosophila melanogaster with Genomic Transgenes from Drosophila pseudoobscura
por: Langer, Christoph C. H., et al.
Publicado: (2010)

Transcripts from downstream alternative transcription start sites evade uORF-mediated inhibition of gene expression in Arabidopsis
por: Kurihara, Yukio, et al.
Publicado: (2018)

Identification and prediction of alternative transcription start sites that generate rod photoreceptor-specific transcripts from ubiquitously expressed genes
por: Popova, Evgenya Y., et al.
Publicado: (2017)

Multi-landmark alignment of genomic signals reveals conserved expression patterns across transcription start sites
por: Vilar, Jose M. G., et al.
Publicado: (2023)

Computational identification of Drosophila microRNA genes
por: Lai, Eric C, et al.
Publicado: (2003)

Boosting with stumps for predicting transcription start sites
por: Zhao, Xiaoyue, et al.
Publicado: (2007)

Systematic Clustering of Transcription Start Site Landscapes
por: Zhao, Xiaobei, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_desf2s6u0obflhlol16ffnvckr