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A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium
To identify the susceptibility gene in hand osteoarthritis (OA) the authors used a two-stage approach genome-wide association study using two discovery samples (the TwinsUK cohort and the Rotterdam discovery subset; a total of 1804 subjects) and four replication samples (the Chingford Study, the Chu...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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BMJ Group
2009
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2729370/ https://www.ncbi.nlm.nih.gov/pubmed/19508968 http://dx.doi.org/10.1136/jmg.2009.067314 |
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author | Zhai, G van Meurs, J B J Livshits, G Meulenbelt, I Valdes, A M Soranzo, N Hart, D Zhang, F Kato, B S Richards, J B Williams, F M K Inouye, M Kloppenburg, M Deloukas, P Slagboom, E Uitterlinden, A Spector, T D |
author_facet | Zhai, G van Meurs, J B J Livshits, G Meulenbelt, I Valdes, A M Soranzo, N Hart, D Zhang, F Kato, B S Richards, J B Williams, F M K Inouye, M Kloppenburg, M Deloukas, P Slagboom, E Uitterlinden, A Spector, T D |
author_sort | Zhai, G |
collection | PubMed |
description | To identify the susceptibility gene in hand osteoarthritis (OA) the authors used a two-stage approach genome-wide association study using two discovery samples (the TwinsUK cohort and the Rotterdam discovery subset; a total of 1804 subjects) and four replication samples (the Chingford Study, the Chuvasha Skeletal Aging Study, the Rotterdam replication subset and the Genetics, Arthrosis, and Progression (GARP) Study; a total of 3266 people). Five single-nucleotide polymorphisms (SNPs) had a likelihood of association with hand OA in the discovery stage and one of them (rs716508), was successfully confirmed in the replication stage (meta-analysis p = 1.81×10(−5)). The C allele conferred a reduced risk of 33% to 41% using a case–control definition. The SNP is located in intron 1 of the A2BP1 gene. This study also found that the same allele of the SNP significantly reduced bone density at both the hip and spine (p<0.01), suggesting the potential mechanism of the gene in hand OA might be via effects on subchondral bone. The authors' findings provide a potential new insight into genetic mechanisms in the development of hand OA. |
format | Text |
id | pubmed-2729370 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | BMJ Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-27293702009-08-27 A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium Zhai, G van Meurs, J B J Livshits, G Meulenbelt, I Valdes, A M Soranzo, N Hart, D Zhang, F Kato, B S Richards, J B Williams, F M K Inouye, M Kloppenburg, M Deloukas, P Slagboom, E Uitterlinden, A Spector, T D J Med Genet Short Report To identify the susceptibility gene in hand osteoarthritis (OA) the authors used a two-stage approach genome-wide association study using two discovery samples (the TwinsUK cohort and the Rotterdam discovery subset; a total of 1804 subjects) and four replication samples (the Chingford Study, the Chuvasha Skeletal Aging Study, the Rotterdam replication subset and the Genetics, Arthrosis, and Progression (GARP) Study; a total of 3266 people). Five single-nucleotide polymorphisms (SNPs) had a likelihood of association with hand OA in the discovery stage and one of them (rs716508), was successfully confirmed in the replication stage (meta-analysis p = 1.81×10(−5)). The C allele conferred a reduced risk of 33% to 41% using a case–control definition. The SNP is located in intron 1 of the A2BP1 gene. This study also found that the same allele of the SNP significantly reduced bone density at both the hip and spine (p<0.01), suggesting the potential mechanism of the gene in hand OA might be via effects on subchondral bone. The authors' findings provide a potential new insight into genetic mechanisms in the development of hand OA. BMJ Group 2009-09 2009-06-24 /pmc/articles/PMC2729370/ /pubmed/19508968 http://dx.doi.org/10.1136/jmg.2009.067314 Text en © Zhai et al 2009 http://creativecommons.org/licenses/by/2.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution Non-commercial License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Report Zhai, G van Meurs, J B J Livshits, G Meulenbelt, I Valdes, A M Soranzo, N Hart, D Zhang, F Kato, B S Richards, J B Williams, F M K Inouye, M Kloppenburg, M Deloukas, P Slagboom, E Uitterlinden, A Spector, T D A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium |
title | A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium |
title_full | A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium |
title_fullStr | A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium |
title_full_unstemmed | A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium |
title_short | A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-OA consortium |
title_sort | genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the treat-oa consortium |
topic | Short Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2729370/ https://www.ncbi.nlm.nih.gov/pubmed/19508968 http://dx.doi.org/10.1136/jmg.2009.067314 |
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