SNP-o-matic

Motivation: High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, memory-efficient and string...

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Detalles Bibliográficos
Autores principales: Manske, Heinrich Magnus, Kwiatkowski, Dominic P.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735664/
https://www.ncbi.nlm.nih.gov/pubmed/19574284
http://dx.doi.org/10.1093/bioinformatics/btp403
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author Manske, Heinrich Magnus
Kwiatkowski, Dominic P.
author_facet Manske, Heinrich Magnus
Kwiatkowski, Dominic P.
author_sort Manske, Heinrich Magnus
collection PubMed
description Motivation: High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, memory-efficient and stringent read mapping tool offering a variety of analytical output functions, with an emphasis on genotyping. Availability: http://snpomatic.sourceforge.net Contact: mm6@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-27356642009-09-02 SNP-o-matic Manske, Heinrich Magnus Kwiatkowski, Dominic P. Bioinformatics Applications Note Motivation: High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. SNP-o-matic is a fast, memory-efficient and stringent read mapping tool offering a variety of analytical output functions, with an emphasis on genotyping. Availability: http://snpomatic.sourceforge.net Contact: mm6@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2009-09-15 2009-07-02 /pmc/articles/PMC2735664/ /pubmed/19574284 http://dx.doi.org/10.1093/bioinformatics/btp403 Text en http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Manske, Heinrich Magnus
Kwiatkowski, Dominic P.
SNP-o-matic
title SNP-o-matic
title_full SNP-o-matic
title_fullStr SNP-o-matic
title_full_unstemmed SNP-o-matic
title_short SNP-o-matic
title_sort snp-o-matic
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735664/
https://www.ncbi.nlm.nih.gov/pubmed/19574284
http://dx.doi.org/10.1093/bioinformatics/btp403
work_keys_str_mv AT manskeheinrichmagnus snpomatic
AT kwiatkowskidominicp snpomatic

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