Cargando…
HI: haplotype improver using paired-end short reads
Summary: We present a program to improve haplotype reconstruction by incorporating information from paired-end reads, and demonstrate its utility on simulated data. We find that given a fixed coverage, longer reads (implying fewer of them) are preferable. Availability: The executable and user manual...
Autores principales: | Long, Quan, MacArthur, Daniel, Ning, Zemin, Tyler-Smith, Chris |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2009
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735667/ https://www.ncbi.nlm.nih.gov/pubmed/19570807 http://dx.doi.org/10.1093/bioinformatics/btp412 |
Ejemplares similares
-
REscan: inferring repeat expansions and structural variation in paired-end short read sequencing data
por: McLaughlin, Russell Lewis
Publicado: (2020) -
Evaluation of haplotype-aware long-read error correction with hifieval
por: Guo, Yujie, et al.
Publicado: (2023) -
HiLight-PTM: an online application to aid matching peptide pairs with isotopically labelled PTMs
por: Whitwell, Harry J, et al.
Publicado: (2019) -
Updates to the RMAP short-read mapping software
por: Smith, Andrew D., et al.
Publicado: (2009) -
scanPAV: a pipeline for extracting presence–absence variations in genome pairs
por: Giordano, Francesca, et al.
Publicado: (2018)