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Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species

BACKGROUND: Quantum mechanical calculations were performed on a variety of uranium species representing U(VI), U(V), U(IV), U-carbonates, U-phosphates, U-oxalates, U-catecholates, U-phosphodiesters, U-phosphorylated N-acetyl-glucosamine (NAG), and U-2-Keto-3-doxyoctanoate (KDO) with explicit solvati...

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Detalles Bibliográficos
Autores principales: Kubicki, James D, Halada, Gary P, Jha, Prashant, Phillips, Brian L
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2739206/
https://www.ncbi.nlm.nih.gov/pubmed/19689800
http://dx.doi.org/10.1186/1752-153X-3-10
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author Kubicki, James D
Halada, Gary P
Jha, Prashant
Phillips, Brian L
author_facet Kubicki, James D
Halada, Gary P
Jha, Prashant
Phillips, Brian L
author_sort Kubicki, James D
collection PubMed
description BACKGROUND: Quantum mechanical calculations were performed on a variety of uranium species representing U(VI), U(V), U(IV), U-carbonates, U-phosphates, U-oxalates, U-catecholates, U-phosphodiesters, U-phosphorylated N-acetyl-glucosamine (NAG), and U-2-Keto-3-doxyoctanoate (KDO) with explicit solvation by H(2)O molecules. These models represent major U species in natural waters and complexes on bacterial surfaces. The model results are compared to observed EXAFS, IR, Raman and NMR spectra. RESULTS: Agreement between experiment and theory is acceptable in most cases, and the reasons for discrepancies are discussed. Calculated Gibbs free energies are used to constrain which configurations are most likely to be stable under circumneutral pH conditions. Reduction of U(VI) to U(IV) is examined for the U-carbonate and U-catechol complexes. CONCLUSION: Results on the potential energy differences between U(V)- and U(IV)-carbonate complexes suggest that the cause of slower disproportionation in this system is electrostatic repulsion between UO(2 )[CO(3)](3)(5- )ions that must approach one another to form U(VI) and U(IV) rather than a change in thermodynamic stability. Calculations on U-catechol species are consistent with the observation that UO(2)(2+ )can oxidize catechol and form quinone-like species. In addition, outer-sphere complexation is predicted to be the most stable for U-catechol interactions based on calculated energies and comparison to (13)C NMR spectra. Outer-sphere complexes (i.e., ion pairs bridged by water molecules) are predicted to be comparable in Gibbs free energy to inner-sphere complexes for a model carboxylic acid. Complexation of uranyl to phosphorus-containing groups in extracellular polymeric substances is predicted to favor phosphonate groups, such as that found in phosphorylated NAG, rather than phosphodiesters, such as those in nucleic acids.
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spelling pubmed-27392062009-09-08 Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species Kubicki, James D Halada, Gary P Jha, Prashant Phillips, Brian L Chem Cent J Research Article BACKGROUND: Quantum mechanical calculations were performed on a variety of uranium species representing U(VI), U(V), U(IV), U-carbonates, U-phosphates, U-oxalates, U-catecholates, U-phosphodiesters, U-phosphorylated N-acetyl-glucosamine (NAG), and U-2-Keto-3-doxyoctanoate (KDO) with explicit solvation by H(2)O molecules. These models represent major U species in natural waters and complexes on bacterial surfaces. The model results are compared to observed EXAFS, IR, Raman and NMR spectra. RESULTS: Agreement between experiment and theory is acceptable in most cases, and the reasons for discrepancies are discussed. Calculated Gibbs free energies are used to constrain which configurations are most likely to be stable under circumneutral pH conditions. Reduction of U(VI) to U(IV) is examined for the U-carbonate and U-catechol complexes. CONCLUSION: Results on the potential energy differences between U(V)- and U(IV)-carbonate complexes suggest that the cause of slower disproportionation in this system is electrostatic repulsion between UO(2 )[CO(3)](3)(5- )ions that must approach one another to form U(VI) and U(IV) rather than a change in thermodynamic stability. Calculations on U-catechol species are consistent with the observation that UO(2)(2+ )can oxidize catechol and form quinone-like species. In addition, outer-sphere complexation is predicted to be the most stable for U-catechol interactions based on calculated energies and comparison to (13)C NMR spectra. Outer-sphere complexes (i.e., ion pairs bridged by water molecules) are predicted to be comparable in Gibbs free energy to inner-sphere complexes for a model carboxylic acid. Complexation of uranyl to phosphorus-containing groups in extracellular polymeric substances is predicted to favor phosphonate groups, such as that found in phosphorylated NAG, rather than phosphodiesters, such as those in nucleic acids. BioMed Central 2009-08-18 /pmc/articles/PMC2739206/ /pubmed/19689800 http://dx.doi.org/10.1186/1752-153X-3-10 Text en Copyright © 2009 Kubicki et al
spellingShingle Research Article
Kubicki, James D
Halada, Gary P
Jha, Prashant
Phillips, Brian L
Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_full Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_fullStr Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_full_unstemmed Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_short Quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
title_sort quantum mechanical calculation of aqueuous uranium complexes: carbonate, phosphate, organic and biomolecular species
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2739206/
https://www.ncbi.nlm.nih.gov/pubmed/19689800
http://dx.doi.org/10.1186/1752-153X-3-10
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