Cargando…

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome

BACKGROUND: Although the Illumina 1 G Genome Analyzer generates billions of base pairs of sequence data, challenges arise in sequence selection due to the varying sequence quality. Therefore, in the framework of the International Porcine SNP Chip Consortium, this pilot study aimed to evaluate the im...

Descripción completa

Detalles Bibliográficos
Autores principales:	Amaral, Andreia J, Megens, Hendrik-Jan, Kerstens, Hindrik HD, Heuven, Henri CM, Dibbits, Bert, Crooijmans, Richard PMA, den Dunnen, Johan T, Groenen, Martien AM
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2739861/ https://www.ncbi.nlm.nih.gov/pubmed/19674453 http://dx.doi.org/10.1186/1471-2164-10-374

Ejemplares similares

Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries
por: Kerstens, Hindrik HD, et al.
Publicado: (2011)

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey
por: Kerstens, Hindrik HD, et al.
Publicado: (2009)

Mining for single nucleotide polymorphisms in pig genome sequence data
por: Kerstens, Hindrik HD, et al.
Publicado: (2009)

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)
por: Kraus, Robert HS, et al.
Publicado: (2011)

A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the Turkey and Chicken genomes
por: Aslam, Muhammad L, et al.
Publicado: (2010)

Widespread horizontal genomic exchange does not erode species barriers among sympatric ducks
por: Kraus, Robert HS, et al.
Publicado: (2012)

Regional regulation of transcription in the chicken genome
por: Nie, Haisheng, et al.
Publicado: (2010)

Genome-wide candidate regions for selective sweeps revealed through massive parallel sequencing of DNA across ten turkey populations
por: Aslam, Muhammad L, et al.
Publicado: (2014)

Genome-Wide Footprints of Pig Domestication and Selection Revealed through Massive Parallel Sequencing of Pooled DNA
por: Amaral, Andreia J., et al.
Publicado: (2011)

Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken
por: Megens, Hendrik-Jan, et al.
Publicado: (2009)

Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds
por: Herrero-Medrano, Juan Manuel, et al.
Publicado: (2014)

Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula
por: Herrero-Medrano, Juan Manuel, et al.
Publicado: (2013)

Parallel Genetic Origin of Foot Feathering in Birds
por: Bortoluzzi, Chiara, et al.
Publicado: (2020)

Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo)
por: Aslam, Muhammad L, et al.
Publicado: (2012)

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication
por: Paudel, Yogesh, et al.
Publicado: (2013)

The development and characterization of a 60K SNP chip for chicken
por: Groenen, Martien AM, et al.
Publicado: (2011)

Biodiversity of pig breeds from China and Europe estimated from pooled DNA samples: differences in microsatellite variation between two areas of domestication
por: Megens, Hendrik-Jan, et al.
Publicado: (2008)

Whole genome QTL mapping for growth, meat quality and breast meat yield traits in turkey
por: Aslam, Muhammad L, et al.
Publicado: (2011)

The Visayan Warty Pig (Sus cebifrons) Genome Provides Insight Into Chromosome Evolution and Sensory Adaptation in Pigs
por: Liu, Langqing, et al.
Publicado: (2022)

Detailed molecular and epigenetic characterization of the pig IPEC-J2 and chicken SL-29 cell lines
por: de Vos, Jani, et al.
Publicado: (2023)

A Novel Loss-of-Function Variant in Transmembrane Protein 263 (TMEM263) of Autosomal Dwarfism in Chicken
por: Wu, Zhou, et al.
Publicado: (2018)

Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations
por: Bosse, Mirte, et al.
Publicado: (2015)

On the relationship between an Asian haplotype on chromosome 6 that reduces androstenone levels in boars and the differential expression of SULT2A1 in the testis
por: Hidalgo, André M, et al.
Publicado: (2014)

Assessing the contribution of breeds to genetic diversity in conservation schemes
por: Eding, Herwin, et al.
Publicado: (2002)

Development of a genetic tool for product regulation in the diverse British pig breed market
por: Wilkinson, Samantha, et al.
Publicado: (2012)

A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6
por: Duijvesteijn, Naomi, et al.
Publicado: (2010)

Balancing selection on a recessive lethal deletion with pleiotropic effects on two neighboring genes in the porcine genome
por: Derks, Martijn F. L., et al.
Publicado: (2018)

Parallel Genomic Changes Drive Repeated Evolution of Placentas in Live-Bearing Fish
por: van Kruistum, Henri, et al.
Publicado: (2021)

Regional differences in recombination hotspots between two chicken populations
por: Elferink, Martin G, et al.
Publicado: (2010)

CNVs are associated with genomic architecture in a songbird
por: da Silva, Vinicius H., et al.
Publicado: (2018)

The Imprinted Gene DIO3 Is a Candidate Gene for Litter Size in Pigs
por: Coster, Albart, et al.
Publicado: (2012)

Partial duplication of the PRLR and SPEF2 genes at the late feathering locus in chicken
por: Elferink, Martin G, et al.
Publicado: (2008)

Number and mode of inheritance of QTL influencing backfat thickness on SSC2p in Sino-European pig pedigrees
por: Tortereau, Flavie, et al.
Publicado: (2011)

Combining two Meishan F2 crosses improves the detection of QTL on pig chromosomes 2, 4 and 6
por: Tortereau, Flavie, et al.
Publicado: (2010)

Signatures of Selection in the Genomes of Commercial and Non-Commercial Chicken Breeds
por: Elferink, Martin G., et al.
Publicado: (2012)

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
por: Frantz, Laurent AF, et al.
Publicado: (2013)

Mapping the Naked Neck (NA) and Polydactyly (PO) mutants of the chicken with microsatellite molecular markers
por: Pitel, Frédérique, et al.
Publicado: (2000)

Genetic variances, heritabilities and maternal effects on body weight, breast meat yield, meat quality traits and the shape of the growth curve in turkey birds
por: Aslam, Muhammad L, et al.
Publicado: (2011)

Genome-wide SNP data unveils the globalization of domesticated pigs
por: Yang, Bin, et al.
Publicado: (2017)

Correction to: Genome-wide SNP data unveils the globalization of domesticated pigs
por: Yang, Bin, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_81chcs6rpbatgt8lu8jplae7r8