Improved base calling for the Illumina Genome Analyzer using machine learning strategies

The Illumina Genome Analyzer generates millions of short sequencing reads. We present Ibis (Improved base identification system), an accurate, fast and easy-to-use base caller that significantly reduces the error rate and increases the output of usable reads. Ibis is faster and more robust with resp...

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Detalles Bibliográficos
Autores principales: Kircher, Martin, Stenzel, Udo, Kelso, Janet
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745764/
https://www.ncbi.nlm.nih.gov/pubmed/19682367
http://dx.doi.org/10.1186/gb-2009-10-8-r83
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author Kircher, Martin
Stenzel, Udo
Kelso, Janet
author_facet Kircher, Martin
Stenzel, Udo
Kelso, Janet
author_sort Kircher, Martin
collection PubMed
description The Illumina Genome Analyzer generates millions of short sequencing reads. We present Ibis (Improved base identification system), an accurate, fast and easy-to-use base caller that significantly reduces the error rate and increases the output of usable reads. Ibis is faster and more robust with respect to chemistry and technology than other publicly available packages. Ibis is freely available under the GPL from .
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spelling pubmed-27457642009-09-17 Improved base calling for the Illumina Genome Analyzer using machine learning strategies Kircher, Martin Stenzel, Udo Kelso, Janet Genome Biol Software The Illumina Genome Analyzer generates millions of short sequencing reads. We present Ibis (Improved base identification system), an accurate, fast and easy-to-use base caller that significantly reduces the error rate and increases the output of usable reads. Ibis is faster and more robust with respect to chemistry and technology than other publicly available packages. Ibis is freely available under the GPL from . BioMed Central 2009 2009-08-14 /pmc/articles/PMC2745764/ /pubmed/19682367 http://dx.doi.org/10.1186/gb-2009-10-8-r83 Text en Copyright © 2009 Kircher et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Kircher, Martin
Stenzel, Udo
Kelso, Janet
Improved base calling for the Illumina Genome Analyzer using machine learning strategies
title Improved base calling for the Illumina Genome Analyzer using machine learning strategies
title_full Improved base calling for the Illumina Genome Analyzer using machine learning strategies
title_fullStr Improved base calling for the Illumina Genome Analyzer using machine learning strategies
title_full_unstemmed Improved base calling for the Illumina Genome Analyzer using machine learning strategies
title_short Improved base calling for the Illumina Genome Analyzer using machine learning strategies
title_sort improved base calling for the illumina genome analyzer using machine learning strategies
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745764/
https://www.ncbi.nlm.nih.gov/pubmed/19682367
http://dx.doi.org/10.1186/gb-2009-10-8-r83
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