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Automated MAD and MIR structure solution
Obtaining an electron-density map from X-ray diffraction data can be difficult and time-consuming even after the data have been collected, largely because MIR and MAD structure determinations currently require many subjective evaluations of the qualities of trial heavy-atom partial structures before...
Autores principales: | , |
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Formato: | Texto |
Lenguaje: | English |
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International Union of Crystallography
1999
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746121/ https://www.ncbi.nlm.nih.gov/pubmed/10089316 http://dx.doi.org/10.1107/S0907444999000839 |
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author | Terwilliger, Thomas C. Berendzen, Joel |
author_facet | Terwilliger, Thomas C. Berendzen, Joel |
author_sort | Terwilliger, Thomas C. |
collection | PubMed |
description | Obtaining an electron-density map from X-ray diffraction data can be difficult and time-consuming even after the data have been collected, largely because MIR and MAD structure determinations currently require many subjective evaluations of the qualities of trial heavy-atom partial structures before a correct heavy-atom solution is obtained. A set of criteria for evaluating the quality of heavy-atom partial solutions in macromolecular crystallography have been developed. These have allowed the conversion of the crystal structure-solution process into an optimization problem and have allowed its automation. The SOLVE software has been used to solve MAD data sets with as many as 52 selenium sites in the asymmetric unit. The automated structure-solution process developed is a major step towards the fully automated structure-determination, model-building and refinement procedure which is needed for genomic scale structure determinations. |
format | Text |
id | pubmed-2746121 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 1999 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-27461212009-09-23 Automated MAD and MIR structure solution Terwilliger, Thomas C. Berendzen, Joel Acta Crystallogr D Biol Crystallogr Research Papers Obtaining an electron-density map from X-ray diffraction data can be difficult and time-consuming even after the data have been collected, largely because MIR and MAD structure determinations currently require many subjective evaluations of the qualities of trial heavy-atom partial structures before a correct heavy-atom solution is obtained. A set of criteria for evaluating the quality of heavy-atom partial solutions in macromolecular crystallography have been developed. These have allowed the conversion of the crystal structure-solution process into an optimization problem and have allowed its automation. The SOLVE software has been used to solve MAD data sets with as many as 52 selenium sites in the asymmetric unit. The automated structure-solution process developed is a major step towards the fully automated structure-determination, model-building and refinement procedure which is needed for genomic scale structure determinations. International Union of Crystallography 1999-04-01 1999-04-01 /pmc/articles/PMC2746121/ /pubmed/10089316 http://dx.doi.org/10.1107/S0907444999000839 Text en © Terwilliger & Berendzen 1999 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Terwilliger, Thomas C. Berendzen, Joel Automated MAD and MIR structure solution |
title | Automated MAD and MIR structure solution |
title_full | Automated MAD and MIR structure solution |
title_fullStr | Automated MAD and MIR structure solution |
title_full_unstemmed | Automated MAD and MIR structure solution |
title_short | Automated MAD and MIR structure solution |
title_sort | automated mad and mir structure solution |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746121/ https://www.ncbi.nlm.nih.gov/pubmed/10089316 http://dx.doi.org/10.1107/S0907444999000839 |
work_keys_str_mv | AT terwilligerthomasc automatedmadandmirstructuresolution AT berendzenjoel automatedmadandmirstructuresolution |