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Automated MAD and MIR structure solution

Obtaining an electron-density map from X-ray diffraction data can be difficult and time-consuming even after the data have been collected, largely because MIR and MAD structure determinations currently require many subjective evaluations of the qualities of trial heavy-atom partial structures before...

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Detalles Bibliográficos
Autores principales: Terwilliger, Thomas C., Berendzen, Joel
Formato: Texto
Lenguaje:English
Publicado: International Union of Crystallography 1999
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746121/
https://www.ncbi.nlm.nih.gov/pubmed/10089316
http://dx.doi.org/10.1107/S0907444999000839
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author Terwilliger, Thomas C.
Berendzen, Joel
author_facet Terwilliger, Thomas C.
Berendzen, Joel
author_sort Terwilliger, Thomas C.
collection PubMed
description Obtaining an electron-density map from X-ray diffraction data can be difficult and time-consuming even after the data have been collected, largely because MIR and MAD structure determinations currently require many subjective evaluations of the qualities of trial heavy-atom partial structures before a correct heavy-atom solution is obtained. A set of criteria for evaluating the quality of heavy-atom partial solutions in macromolecular crystallography have been developed. These have allowed the conversion of the crystal structure-solution process into an optimization problem and have allowed its automation. The SOLVE software has been used to solve MAD data sets with as many as 52 selenium sites in the asymmetric unit. The automated structure-solution process developed is a major step towards the fully automated structure-determination, model-building and refinement procedure which is needed for genomic scale structure determinations.
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spelling pubmed-27461212009-09-23 Automated MAD and MIR structure solution Terwilliger, Thomas C. Berendzen, Joel Acta Crystallogr D Biol Crystallogr Research Papers Obtaining an electron-density map from X-ray diffraction data can be difficult and time-consuming even after the data have been collected, largely because MIR and MAD structure determinations currently require many subjective evaluations of the qualities of trial heavy-atom partial structures before a correct heavy-atom solution is obtained. A set of criteria for evaluating the quality of heavy-atom partial solutions in macromolecular crystallography have been developed. These have allowed the conversion of the crystal structure-solution process into an optimization problem and have allowed its automation. The SOLVE software has been used to solve MAD data sets with as many as 52 selenium sites in the asymmetric unit. The automated structure-solution process developed is a major step towards the fully automated structure-determination, model-building and refinement procedure which is needed for genomic scale structure determinations. International Union of Crystallography 1999-04-01 1999-04-01 /pmc/articles/PMC2746121/ /pubmed/10089316 http://dx.doi.org/10.1107/S0907444999000839 Text en © Terwilliger & Berendzen 1999 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Terwilliger, Thomas C.
Berendzen, Joel
Automated MAD and MIR structure solution
title Automated MAD and MIR structure solution
title_full Automated MAD and MIR structure solution
title_fullStr Automated MAD and MIR structure solution
title_full_unstemmed Automated MAD and MIR structure solution
title_short Automated MAD and MIR structure solution
title_sort automated mad and mir structure solution
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746121/
https://www.ncbi.nlm.nih.gov/pubmed/10089316
http://dx.doi.org/10.1107/S0907444999000839
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