Cargando…

Rapid high-throughput analysis of DNaseI hypersensitive sites using a modified Multiplex Ligation-dependent Probe Amplification approach

BACKGROUND: Mapping DNaseI hypersensitive sites is commonly used to identify regulatory regions in the genome. However, currently available methods are either time consuming and laborious, expensive or require large numbers of cells. We aimed to develop a quick and straightforward method for the ana...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ohnesorg, Thomas, Eggers, Stefanie, Leonhard, Wouter N, Sinclair, Andrew H, White, Stefan J
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2748097/ https://www.ncbi.nlm.nih.gov/pubmed/19728890 http://dx.doi.org/10.1186/1471-2164-10-412

Ejemplares similares

Real-time PCR mapping of DNaseI-hypersensitive sites using a novel ligation-mediated amplification technique
por: Follows, George A., et al.
Publicado: (2007)

Transposable element derived DNaseI-hypersensitive sites in the human genome
por: Mariño-Ramírez, Leonardo, et al.
Publicado: (2006)

Analysis of Mice Lacking DNaseI Hypersensitive Sites at the 5′ End of the IgH Locus
por: Perlot, Thomas, et al.
Publicado: (2010)

Evolution and Comprehensive Analysis of DNaseI Hypersensitive Sites in Regulatory Regions of Primate Brain-Related Genes
por: Lu, Yueer, et al.
Publicado: (2019)

DNaseI hypersensitivity at gene-poor, FSH dystrophy-linked 4q35.2
por: Xu, Xueqing, et al.
Publicado: (2009)

TNFα Amplifies DNaseI Expression in Renal Tubular Cells while IL-1β Promotes Nuclear DNaseI Translocation in an Endonuclease-Inactive Form
por: Thiyagarajan, Dhivya, et al.
Publicado: (2015)

Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
por: Cumbie, Jason S., et al.
Publicado: (2015)

Multiplex ligation-dependent probe amplification workflow for the detection of submicroscopic chromosomal abnormalities in patients with developmental delay/intellectual disability
por: Pohovski, Leona Morozin, et al.
Publicado: (2013)

DNaseI Hypersensitivity and Ultraconservation Reveal Novel, Interdependent Long-Range Enhancers at the Complex Pax6 Cis-Regulatory Region
por: McBride, David J., et al.
Publicado: (2011)

DNaseI sensitivity QTLs are a major determinant of human expression variation
por: Degner, Jacob F., et al.
Publicado: (2012)

Probe-specific mixed-model approach to detect copy number differences using multiplex ligation-dependent probe amplification (MLPA)
por: González, Juan R, et al.
Publicado: (2008)

Evaluation of multiplex ligation dependent probe amplification (MLPA) for identification of acute lymphoblastic leukemia with an intrachromosomal amplification of chromosome 21 (iAMP21) in a Brazilian population
por: Fuka, Gerhard, et al.
Publicado: (2015)

Enhancement of DNaseI Salt Tolerance by Mimicking the Domain Structure of DNase from an Extremely Halotolerant Bacterium Thioalkalivibrio sp. K90mix
por: Alzbutas, Gediminas, et al.
Publicado: (2016)

Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers
por: Tsumagari, Koji, et al.
Publicado: (2008)

Multiplex indexing approach for the detection of DNase I hypersensitive sites in single cells
por: Gao, Weiwu, et al.
Publicado: (2021)

PeaKDEck: a kernel density estimator-based peak calling program for DNaseI-seq data
por: McCarthy, Michael T., et al.
Publicado: (2014)

DNaseI Protects against Paraquat-Induced Acute Lung Injury and Pulmonary Fibrosis Mediated by Mitochondrial DNA
por: Li, Guo, et al.
Publicado: (2015)

Oncogene amplification in male breast cancer: analysis by multiplex ligation-dependent probe amplification
por: Kornegoor, Robert, et al.
Publicado: (2012)

MAPD: a probe design suite for multiplex ligation-dependent probe amplification assays
por: Zhi, Jizu
Publicado: (2010)

The biofilm matrix destabilizers, EDTA and DNaseI, enhance the susceptibility of nontypeable Hemophilus influenzae biofilms to treatment with ampicillin and ciprofloxacin
por: Cavaliere, Rosalia, et al.
Publicado: (2014)

Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArrays™
por: van Doorn, Ronald, et al.
Publicado: (2007)

Dosage analysis of cancer predisposition genes by multiplex ligation-dependent probe amplification
por: Bunyan, D J, et al.
Publicado: (2004)

Application of Chromosomal Microarray and Multiplex Ligation-dependent Probe Amplification in prenatal diagnosis
por: Sharma, Pankaj, et al.
Publicado: (2014)

Cluster analysis of multiplex ligation-dependent probe amplification data in choroidal melanoma
por: Caines, Rhydian, et al.
Publicado: (2015)

Application of multiplex ligation-dependent probe amplification in the genetic testing of oculocutaneous albinism
por: Zhang, Ying-Zi, et al.
Publicado: (2019)

Bladder cancer patients have increased NETosis and impaired DNaseI-mediated NET degradation that can be therapeutically restored in vitro
por: Herranz, Raquel, et al.
Publicado: (2023)

Index and biological spectrum of human DNase I hypersensitive sites
por: Meuleman, Wouter, et al.
Publicado: (2020)

A cookbook for DNase Hi-C
por: Gridina, Maria, et al.
Publicado: (2021)

Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains
por: Shu, Wenjie, et al.
Publicado: (2011)

Rapid Analysis of Saccharomyces cerevisiae Genome Rearrangements by Multiplex Ligation–Dependent Probe Amplification
por: Chan, Jason E., et al.
Publicado: (2012)

Promoter hypermethylation in male breast cancer: analysis by multiplex ligation-dependent probe amplification
por: Kornegoor, Robert, et al.
Publicado: (2012)

Three Cases of False-positive Multiplex Ligation-dependent Probe Amplification of BRCA1
por: Kim, Kyoung Bo, et al.
Publicado: (2022)

Added Value of HER-2 Amplification Testing by Multiplex Ligation-Dependent Probe Amplification in Invasive Breast Cancer
por: Kuijpers, Chantal C. H. J., et al.
Publicado: (2013)

Deep learning for DNase I hypersensitive sites identification
por: Lyu, Chuqiao, et al.
Publicado: (2018)

Multiplex ligation-dependent probe amplification (MLPA) enhances the molecular diagnosis of aniridia and related disorders
por: Redeker, Egbert J.W., et al.
Publicado: (2008)

Can we rely on the multiplex ligation-dependent probe amplification method (MLPA) for prenatal diagnosis?
por: Omrani, Mir Davood, et al.
Publicado: (2014)

Multiplex ligation-dependant probe amplification study of children with idiopathic mental retardation in South India
por: John, Neetha, et al.
Publicado: (2013)

Multiplex Ligation-Dependent Probe Amplification in X-linked Recessive Muscular Dystrophy in Korean Subjects
por: Suh, Mi Ri, et al.
Publicado: (2017)

A simple way to evaluate self-designed probes for tumor specific Multiplex Ligation-dependent Probe Amplification (MLPA)
por: Pedersen, Kristina, et al.
Publicado: (2010)

Silencing of Renal DNaseI in Murine Lupus Nephritis Imposes Exposure of Large Chromatin Fragments and Activation of Toll Like Receptors and the Clec4e
por: Thiyagarajan, Dhivya, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_e9gq0f5gvo60283spj6cpqhiiv