ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

Summary: ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualizatio...

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Detalles Bibliográficos
Autores principales: Morgan, Martin, Anders, Simon, Lawrence, Michael, Aboyoun, Patrick, Pagès, Hervé, Gentleman, Robert
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752612/
https://www.ncbi.nlm.nih.gov/pubmed/19654119
http://dx.doi.org/10.1093/bioinformatics/btp450
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author Morgan, Martin
Anders, Simon
Lawrence, Michael
Aboyoun, Patrick
Pagès, Hervé
Gentleman, Robert
author_facet Morgan, Martin
Anders, Simon
Lawrence, Michael
Aboyoun, Patrick
Pagès, Hervé
Gentleman, Robert
author_sort Morgan, Martin
collection PubMed
description Summary: ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. Availability and Implementation: This package is implemented in R and available at the Bioconductor web site; the package contains a ‘vignette’ outlining typical work flows. Contact: mtmorgan@fhcrc.org
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spelling pubmed-27526122009-10-01 ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data Morgan, Martin Anders, Simon Lawrence, Michael Aboyoun, Patrick Pagès, Hervé Gentleman, Robert Bioinformatics Applications Note Summary: ShortRead is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. Availability and Implementation: This package is implemented in R and available at the Bioconductor web site; the package contains a ‘vignette’ outlining typical work flows. Contact: mtmorgan@fhcrc.org Oxford University Press 2009-10-01 2009-08-03 /pmc/articles/PMC2752612/ /pubmed/19654119 http://dx.doi.org/10.1093/bioinformatics/btp450 Text en http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Morgan, Martin
Anders, Simon
Lawrence, Michael
Aboyoun, Patrick
Pagès, Hervé
Gentleman, Robert
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
title ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
title_full ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
title_fullStr ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
title_full_unstemmed ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
title_short ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
title_sort shortread: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752612/
https://www.ncbi.nlm.nih.gov/pubmed/19654119
http://dx.doi.org/10.1093/bioinformatics/btp450
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