Cargando…
PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds
Motivation: The explosion of next-generation sequencing data has spawned the design of new algorithms and software tools to provide efficient mapping for different read lengths and sequencing technologies. In particular, ABI's sequencer (SOLiD system) poses a big computational challenge with it...
Autores principales: | Chen, Yangho, Souaiaia, Tade, Chen, Ting |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2009
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752623/ https://www.ncbi.nlm.nih.gov/pubmed/19675096 http://dx.doi.org/10.1093/bioinformatics/btp486 |
Ejemplares similares
-
Effect of RNA integrity on uniquely mapped reads in RNA-Seq
por: Chen, Emily A, et al.
Publicado: (2014) -
Designing Efficient Spaced Seeds for SOLiD Read Mapping
por: Noé, Laurent, et al.
Publicado: (2010) -
FadE: whole genome methylation analysis for multiple sequencing platforms
por: Souaiaia, Tade, et al.
Publicado: (2013) -
Persistent Mycobacterium tuberculosis infection in mice requires PerM for successful cell division
por: Wang, Ruojun, et al.
Publicado: (2019) -
Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping
por: Zeng, Xin, et al.
Publicado: (2015)