FBA-SimVis: interactive visualization of constraint-based metabolic models

Summary: FBA-SimVis is a VANTED plug-in for the constraint-based analysis of metabolic models with special focus on the visual exploration of metabolic flux data resulting from model analysis. The program provides a user-friendly environment for model reconstruction, constraint-based model analysis,...

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Autores principales: Grafahrend-Belau, Eva, Klukas, Christian, Junker, Björn H., Schreiber, Falk
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759546/
https://www.ncbi.nlm.nih.gov/pubmed/19578041
http://dx.doi.org/10.1093/bioinformatics/btp408
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author Grafahrend-Belau, Eva
Klukas, Christian
Junker, Björn H.
Schreiber, Falk
author_facet Grafahrend-Belau, Eva
Klukas, Christian
Junker, Björn H.
Schreiber, Falk
author_sort Grafahrend-Belau, Eva
collection PubMed
description Summary: FBA-SimVis is a VANTED plug-in for the constraint-based analysis of metabolic models with special focus on the visual exploration of metabolic flux data resulting from model analysis. The program provides a user-friendly environment for model reconstruction, constraint-based model analysis, and interactive visualization of the simulation results. With the ability to quantitatively analyse metabolic fluxes in an interactive and visual manner, FBA-SimVis supports a comprehensive understanding of constraint-based metabolic flux models in both overview and detail. Availability: Software with manual and tutorials are freely available at http://fbasimvis.ipk-gatersleben.de/ Contact: grafahr@ipk-gatersleben.de Supplementary information: Examples and supplementary data are available at http://fbasimvis.ipk-gatersleben.de/
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spelling pubmed-27595462009-10-15 FBA-SimVis: interactive visualization of constraint-based metabolic models Grafahrend-Belau, Eva Klukas, Christian Junker, Björn H. Schreiber, Falk Bioinformatics Applications Note Summary: FBA-SimVis is a VANTED plug-in for the constraint-based analysis of metabolic models with special focus on the visual exploration of metabolic flux data resulting from model analysis. The program provides a user-friendly environment for model reconstruction, constraint-based model analysis, and interactive visualization of the simulation results. With the ability to quantitatively analyse metabolic fluxes in an interactive and visual manner, FBA-SimVis supports a comprehensive understanding of constraint-based metabolic flux models in both overview and detail. Availability: Software with manual and tutorials are freely available at http://fbasimvis.ipk-gatersleben.de/ Contact: grafahr@ipk-gatersleben.de Supplementary information: Examples and supplementary data are available at http://fbasimvis.ipk-gatersleben.de/ Oxford University Press 2009-10-15 2009-07-03 /pmc/articles/PMC2759546/ /pubmed/19578041 http://dx.doi.org/10.1093/bioinformatics/btp408 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Grafahrend-Belau, Eva
Klukas, Christian
Junker, Björn H.
Schreiber, Falk
FBA-SimVis: interactive visualization of constraint-based metabolic models
title FBA-SimVis: interactive visualization of constraint-based metabolic models
title_full FBA-SimVis: interactive visualization of constraint-based metabolic models
title_fullStr FBA-SimVis: interactive visualization of constraint-based metabolic models
title_full_unstemmed FBA-SimVis: interactive visualization of constraint-based metabolic models
title_short FBA-SimVis: interactive visualization of constraint-based metabolic models
title_sort fba-simvis: interactive visualization of constraint-based metabolic models
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759546/
https://www.ncbi.nlm.nih.gov/pubmed/19578041
http://dx.doi.org/10.1093/bioinformatics/btp408
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AT junkerbjornh fbasimvisinteractivevisualizationofconstraintbasedmetabolicmodels
AT schreiberfalk fbasimvisinteractivevisualizationofconstraintbasedmetabolicmodels

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