The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

Summary: Experimental techniques that survey an entire genome demand flexible, highly interactive visualization tools that can display new data alongside foundation datasets, such as reference gene annotations. The Integrated Genome Browser (IGB) aims to meet this need. IGB is an open source, deskto...

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Autores principales: Nicol, John W., Helt, Gregg A., Blanchard, Steven G., Raja, Archana, Loraine, Ann E.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759552/
https://www.ncbi.nlm.nih.gov/pubmed/19654113
http://dx.doi.org/10.1093/bioinformatics/btp472
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author Nicol, John W.
Helt, Gregg A.
Blanchard, Steven G.
Raja, Archana
Loraine, Ann E.
author_facet Nicol, John W.
Helt, Gregg A.
Blanchard, Steven G.
Raja, Archana
Loraine, Ann E.
author_sort Nicol, John W.
collection PubMed
description Summary: Experimental techniques that survey an entire genome demand flexible, highly interactive visualization tools that can display new data alongside foundation datasets, such as reference gene annotations. The Integrated Genome Browser (IGB) aims to meet this need. IGB is an open source, desktop graphical display tool implemented in Java that supports real-time zooming and panning through a genome; layout of genomic features and datasets in moveable, adjustable tiers; incremental or genome-scale data loading from remote web servers or local files; and dynamic manipulation of quantitative data via genome graphs. Availability: The application and source code are available from http://igb.bioviz.org and http://genoviz.sourceforge.net. Contact: aloraine@uncc.edu
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spelling pubmed-27595522009-10-15 The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets Nicol, John W. Helt, Gregg A. Blanchard, Steven G. Raja, Archana Loraine, Ann E. Bioinformatics Applications Note Summary: Experimental techniques that survey an entire genome demand flexible, highly interactive visualization tools that can display new data alongside foundation datasets, such as reference gene annotations. The Integrated Genome Browser (IGB) aims to meet this need. IGB is an open source, desktop graphical display tool implemented in Java that supports real-time zooming and panning through a genome; layout of genomic features and datasets in moveable, adjustable tiers; incremental or genome-scale data loading from remote web servers or local files; and dynamic manipulation of quantitative data via genome graphs. Availability: The application and source code are available from http://igb.bioviz.org and http://genoviz.sourceforge.net. Contact: aloraine@uncc.edu Oxford University Press 2009-10-15 2009-08-04 /pmc/articles/PMC2759552/ /pubmed/19654113 http://dx.doi.org/10.1093/bioinformatics/btp472 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Nicol, John W.
Helt, Gregg A.
Blanchard, Steven G.
Raja, Archana
Loraine, Ann E.
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
title The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
title_full The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
title_fullStr The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
title_full_unstemmed The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
title_short The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
title_sort integrated genome browser: free software for distribution and exploration of genome-scale datasets
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759552/
https://www.ncbi.nlm.nih.gov/pubmed/19654113
http://dx.doi.org/10.1093/bioinformatics/btp472
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