A System for Information Management in BioMedical Studies—SIMBioMS

Summary: SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained usin...

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Autores principales: Krestyaninova, Maria, Zarins, Andris, Viksna, Juris, Kurbatova, Natalja, Rucevskis, Peteris, Neogi, Sudeshna Guha, Gostev, Mike, Perheentupa, Teemu, Knuuttila, Juha, Barrett, Amy, Lappalainen, Ilkka, Rung, Johan, Podnieks, Karlis, Sarkans, Ugis, McCarthy, Mark I, Brazma, Alvis
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759553/
https://www.ncbi.nlm.nih.gov/pubmed/19633095
http://dx.doi.org/10.1093/bioinformatics/btp420
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author Krestyaninova, Maria
Zarins, Andris
Viksna, Juris
Kurbatova, Natalja
Rucevskis, Peteris
Neogi, Sudeshna Guha
Gostev, Mike
Perheentupa, Teemu
Knuuttila, Juha
Barrett, Amy
Lappalainen, Ilkka
Rung, Johan
Podnieks, Karlis
Sarkans, Ugis
McCarthy, Mark I
Brazma, Alvis
author_facet Krestyaninova, Maria
Zarins, Andris
Viksna, Juris
Kurbatova, Natalja
Rucevskis, Peteris
Neogi, Sudeshna Guha
Gostev, Mike
Perheentupa, Teemu
Knuuttila, Juha
Barrett, Amy
Lappalainen, Ilkka
Rung, Johan
Podnieks, Karlis
Sarkans, Ugis
McCarthy, Mark I
Brazma, Alvis
author_sort Krestyaninova, Maria
collection PubMed
description Summary: SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented. Availability: The source code, documentation and initialization scripts are available at http://simbioms.org. Contact: support@simbioms.org; mariak@ebi.ac.uk
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spelling pubmed-27595532009-10-15 A System for Information Management in BioMedical Studies—SIMBioMS Krestyaninova, Maria Zarins, Andris Viksna, Juris Kurbatova, Natalja Rucevskis, Peteris Neogi, Sudeshna Guha Gostev, Mike Perheentupa, Teemu Knuuttila, Juha Barrett, Amy Lappalainen, Ilkka Rung, Johan Podnieks, Karlis Sarkans, Ugis McCarthy, Mark I Brazma, Alvis Bioinformatics Applications Note Summary: SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented. Availability: The source code, documentation and initialization scripts are available at http://simbioms.org. Contact: support@simbioms.org; mariak@ebi.ac.uk Oxford University Press 2009-10-15 2009-07-24 /pmc/articles/PMC2759553/ /pubmed/19633095 http://dx.doi.org/10.1093/bioinformatics/btp420 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Krestyaninova, Maria
Zarins, Andris
Viksna, Juris
Kurbatova, Natalja
Rucevskis, Peteris
Neogi, Sudeshna Guha
Gostev, Mike
Perheentupa, Teemu
Knuuttila, Juha
Barrett, Amy
Lappalainen, Ilkka
Rung, Johan
Podnieks, Karlis
Sarkans, Ugis
McCarthy, Mark I
Brazma, Alvis
A System for Information Management in BioMedical Studies—SIMBioMS
title A System for Information Management in BioMedical Studies—SIMBioMS
title_full A System for Information Management in BioMedical Studies—SIMBioMS
title_fullStr A System for Information Management in BioMedical Studies—SIMBioMS
title_full_unstemmed A System for Information Management in BioMedical Studies—SIMBioMS
title_short A System for Information Management in BioMedical Studies—SIMBioMS
title_sort system for information management in biomedical studies—simbioms
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759553/
https://www.ncbi.nlm.nih.gov/pubmed/19633095
http://dx.doi.org/10.1093/bioinformatics/btp420
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