Cargando…

Transcript quantification with RNA-Seq data

Detalles Bibliográficos
Autores principales:	Bohnert, Regina, Behr, Jonas, Rätsch, Gunnar
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Poster Presentation
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2764136/ http://dx.doi.org/10.1186/1471-2105-10-S13-P5

Ejemplares similares

rQuant.web: a tool for RNA-Seq-based transcript quantitation
por: Bohnert, Regina, et al.
Publicado: (2010)

MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
por: Behr, Jonas, et al.
Publicado: (2013)

Oqtans: a multifunctional workbench for RNA-seq data analysis
por: Sreedharan, Vipin T, et al.
Publicado: (2014)

Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data
por: Schultheiss, Sebastian J, et al.
Publicado: (2011)

SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data
por: Kahles, André, et al.
Publicado: (2016)

Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
por: Sreedharan, Vipin T., et al.
Publicado: (2014)

RNA-Seq-based transcriptional map of the bovine respiratory disease pathogen Histophilus somni 2336
por: Kumar, Ranjit, et al.
Publicado: (2011)

Development and evaluation of RNA-seq methods
por: Levin, Joshua, et al.
Publicado: (2010)

Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla x grandis evaluated by RNA-seq technology
por: Camargo, Eduardo, et al.
Publicado: (2011)

Evaluating statistical learning methods for cell type classification and feature selection using RNA-seq data
por: Chen, Hao
Publicado: (2014)

RNA-seq: impact of RNA degradation on transcript quantification
por: Gallego Romero, Irene, et al.
Publicado: (2014)

RNA-Seq methods for imperfect samples: development, evaluation and applications
por: Adiconis, Xian, et al.
Publicado: (2011)

Complete RNA-seq analysis of cancer transcriptomes from FFPE samples
por: Luo, Shujun, et al.
Publicado: (2010)

RNA-Seq analysis of two brain regions vulnerable to Alzheimer's disease
por: Wang, Xinkun
Publicado: (2012)

Accurate detection of differential RNA processing
por: Drewe, Philipp, et al.
Publicado: (2013)

Major differences in microRNA quantification are platform and sequence dependent
por: Feldmesser, Ester, et al.
Publicado: (2012)

Analysis of replacing DNase-seq data with histone marks in computational dimer prediction
por: Osamor, Victor Chukwudi, et al.
Publicado: (2015)

Systematic evaluation of spliced alignment programs for RNA-seq data
por: Engström, Pär G, et al.
Publicado: (2013)

Quantification of interventricular dyssynchrony by phase contrast magnetic resonance angiography
por: Muellerleile, Kai, et al.
Publicado: (2009)

Transcriptome profiling from formalin-fixed, paraffin-embedded tumor specimens by RNA-seq
por: Qu, Kunbin, et al.
Publicado: (2010)

MMR: a tool for read multi-mapper resolution
por: Kahles, André, et al.
Publicado: (2016)

Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq
por: Kusko, Rebecca L, et al.
Publicado: (2012)

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
por: Li, Bo, et al.
Publicado: (2011)

Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data
por: Shao, Wanqing, et al.
Publicado: (2021)

Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq
por: Liu, Peng, et al.
Publicado: (2016)

RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
por: Zhang, Zhaojun, et al.
Publicado: (2014)

Improved visualization and quantification of 4D flow data using divergence-free wavelets
por: Ong, Frank, et al.
Publicado: (2013)

Quantification of coronary enhancement - reproducibility of methods and feasibility of quantification in health and disease
por: Varma, Niharika, et al.
Publicado: (2013)

Combining extracellular volume fraction imaging and T2 quantification by cardiovascular magnetic resonance in patients with clinically suspected myocarditis
por: Radunski, Ulf K, et al.
Publicado: (2013)

Identification of pyrin targets by CHiP-Seq
por: Wood, G, et al.
Publicado: (2015)

Quantification of stress raisers in ARDS
por: Cressoni, M, et al.
Publicado: (2013)

Towards reliable isoform quantification using RNA-SEQ data
por: Howard, Brian E, et al.
Publicado: (2010)

Prediction and Quantification of Splice Events from RNA-Seq Data
por: Goldstein, Leonard D., et al.
Publicado: (2016)

Impact of gene annotation choice on the quantification of RNA-seq data
por: Chisanga, David, et al.
Publicado: (2022)

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
por: Pardo-Palacios, Francisco J., et al.
Publicado: (2023)

Quantification of NADPH balance during adipogenesis
por: Liu, Ling, et al.
Publicado: (2014)

Quantification of wall shear stress using finite-element interpolations in multidimensional phase contrast MR data of the thoracic aorta
por: Sotelo, Julio A, et al.
Publicado: (2014)

ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data
por: Gao, Yuan, et al.
Publicado: (2023)

Acfs: accurate circRNA identification and quantification from RNA-Seq data
por: You, Xintian, et al.
Publicado: (2016)

In vivo quantification of the Achilles tendon moment arm
por: Sheehan, Frances T
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_9iqfjcmkm45e5jrtmotf72eg2i