Cargando…

Genomic Promoter Analysis Predicts Functional Transcription Factor Binding

Background. The computational identification of functional transcription factor binding sites (TFBSs) remains a major challenge of computational biology. Results. We have analyzed the conserved promoter sequences for the complete set of human RefSeq genes using our conserved transcription factor bin...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rao, J. Sunil, Karanam, Suresh, McCabe, Colleen D., Moreno, Carlos S.
Formato:	Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2008
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2768302/ https://www.ncbi.nlm.nih.gov/pubmed/19865592 http://dx.doi.org/10.1155/2008/369830

Ejemplares similares

A genomic approach to the identification and characterization of HOXA13 functional binding elements
por: McCabe, Colleen D., et al.
Publicado: (2005)

The Stress-Regulated Transcription Factor CHOP Promotes Hepatic Inflammatory Gene Expression, Fibrosis, and Oncogenesis
por: DeZwaan-McCabe, Diane, et al.
Publicado: (2013)

Scoring functions for transcription factor binding site prediction
por: Friberg, Markus, et al.
Publicado: (2005)

Investigating the Predictive Value of Functional MRI to Appetitive and Aversive Stimuli: A Pattern Classification Approach
por: McCabe, Ciara, et al.
Publicado: (2016)

Functional analysis of transcription factor binding sites in human promoters
por: Whitfield, Troy W, et al.
Publicado: (2012)

Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs
por: Veerla, Srinivas, et al.
Publicado: (2010)

Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoter
por: Briones-Orta, Marco Antonio, et al.
Publicado: (2017)

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli
por: Mendoza-Vargas, Alfredo, et al.
Publicado: (2009)

Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences
por: Ward, Lucas D., et al.
Publicado: (2008)

Decoding the Inversion Symmetry Underlying Transcription Factor DNA-Binding Specificity and Functionality in the Genome
por: Coons, Laurel A., et al.
Publicado: (2019)

Integrating binding and expression data to predict transcription factors combined function
por: Ahmed, Mahmoud, et al.
Publicado: (2020)

Genome-wide prediction of transcription factor binding sites using an integrated model
por: Won, Kyoung-Jae, et al.
Publicado: (2010)

Simultaneous prediction of transcription factor binding sites in a group of prokaryotic genomes
por: Zhang, Shaoqiang, et al.
Publicado: (2010)

Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites
por: Blanchette, Mathieu
Publicado: (2012)

Prediction of genome-wide effects of single nucleotide variants on transcription factor binding
por: Carrasco Pro, Sebastian, et al.
Publicado: (2020)

Functional materials design: octahedral tilts in hybrid n = 1 Ruddlesden–Popper phases
por: McCabe, Emma E.
Publicado: (2023)

Engineering transcription factors with novel DNA-binding specificity using comparative genomics
por: Desai, Tasha A., et al.
Publicado: (2009)

Stressed to Death: The Role of Transcription Factors in Plant Programmed Cell Death Induced by Abiotic and Biotic Stimuli
por: Burke, Rory, et al.
Publicado: (2020)

Patterns of transcription factor binding and epigenome at promoters allow interpretable predictability of multiple functions of non-coding and coding genes
por: Chandra, Omkar, et al.
Publicado: (2023)

Integrated Assessment and Prediction of Transcription Factor Binding
por: Beyer, Andreas, et al.
Publicado: (2006)

Advancing Metacognitive Practices in Experimental Design: A Suite of Worksheet-Based Activities To Promote Reflection and Discourse in Laboratory Contexts
por: McCabe, Thomas M., et al.
Publicado: (2020)

Supraclavicular brachial plexus block: Comparison of varying doses of dexmedetomidine combined with levobupivacaine: A double-blind randomised trial
por: Nallam, Srinivasa Rao, et al.
Publicado: (2017)

Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data
por: Yang, Tzu-Hsien, et al.
Publicado: (2013)

Using Conversation Topics for Predicting Therapy Outcomes in Schizophrenia
por: Howes, Christine, et al.
Publicado: (2013)

Antidepressant medications reduce subcortical–cortical resting-state functional connectivity in healthy volunteers
por: McCabe, Ciara, et al.
Publicado: (2011)

Anhedonia and depression severity dissociated by dmPFC resting-state functional connectivity in adolescents
por: Rzepa, Ewelina, et al.
Publicado: (2018)

Predicting transcription factor binding sites using local over-representation and comparative genomics
por: Defrance, Matthieu, et al.
Publicado: (2006)

Identifying Functional Transcription Factor Binding Sites in Yeast by Considering Their Positional Preference in the Promoters
por: Lai, Fu-Jou, et al.
Publicado: (2013)

Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs
por: Liu, Bingchuan, et al.
Publicado: (2011)

Comparative efficacy of bepotastine besilate 1.5% ophthalmic solution versus olopatadine hydrochloride 0.2% ophthalmic solution evaluated by patient preference
por: McCabe, Craig F, et al.
Publicado: (2012)

An Unusual Presentation of Right-Sided Sciatica with Foot Drop
por: McCabe, Fergus J., et al.
Publicado: (2016)

Temporal clustering of gene expression links the metabolic transcription factor HNF4α to the ER stress-dependent gene regulatory network
por: Arensdorf, Angela M., et al.
Publicado: (2013)

Decreased anticipated pleasure correlates with increased salience network resting state functional connectivity in adolescents with depressive symptomatology
por: Rzepa, Ewelina, et al.
Publicado: (2016)

Understanding Variation in Transcription Factor Binding by Modeling Transcription Factor Genome-Epigenome Interactions
por: Chen, Chieh-Chun, et al.
Publicado: (2013)

Can Genetics Predict Sports Injury? The Association of the Genes GDF5, AMPD1, COL5A1 and IGF2 on Soccer Player Injury Occurrence
por: McCabe, Kiah, et al.
Publicado: (2018)

Supporting patients in the transition to the revised pexidartinib dosing regimen: perspectives from the multidisciplinary clinical and allied health professional team
por: McCabe, Colleen, et al.
Publicado: (2023)

The Role of Genome Accessibility in Transcription Factor Binding in Bacteria
por: Gomes, Antonio L. C., et al.
Publicado: (2016)

Depressive Symptoms and Psychosocial Functioning in Preadolescent Children
por: McCabe, Marita, et al.
Publicado: (2011)

The Functional Consequences of Variation in Transcription Factor Binding
por: Cusanovich, Darren A., et al.
Publicado: (2014)

Genomic distribution and context dependent functionality of novel WRKY transcription factor binding sites
por: Arndt, Laureen Christin, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_2p86mk0e0knd6ing1lt73aa9b6