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SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel

BACKGROUND: Single nucleotide polymorphism (SNP) genotyping is a major activity in biomedical research. Scientists prefer to have a facile access to the results which may require conversions between data formats. First hand SNP data is often entered in or saved in the MS-Excel format, but this softw...

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Detalles Bibliográficos
Autores principales: Chen, Bowang, Wilkening, Stefan, Drechsel, Marion, Hemminki, Kari
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771038/
https://www.ncbi.nlm.nih.gov/pubmed/19852806
http://dx.doi.org/10.1186/1756-0500-2-214
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author Chen, Bowang
Wilkening, Stefan
Drechsel, Marion
Hemminki, Kari
author_facet Chen, Bowang
Wilkening, Stefan
Drechsel, Marion
Hemminki, Kari
author_sort Chen, Bowang
collection PubMed
description BACKGROUND: Single nucleotide polymorphism (SNP) genotyping is a major activity in biomedical research. Scientists prefer to have a facile access to the results which may require conversions between data formats. First hand SNP data is often entered in or saved in the MS-Excel format, but this software lacks genetic and epidemiological related functions. A general tool to do basic genetic and epidemiological analysis and data conversion for MS-Excel is needed. FINDINGS: The SNP_tools package is prepared as an add-in for MS-Excel. The code is written in Visual Basic for Application, embedded in the Microsoft Office package. This add-in is an easy to use tool for users with basic computer knowledge (and requirements for basic statistical analysis). CONCLUSION: Our implementation for Microsoft Excel 2000-2007 in Microsoft Windows 2000, XP, Vista and Windows 7 beta can handle files in different formats and converts them into other formats. It is a free software.
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spelling pubmed-27710382009-10-31 SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel Chen, Bowang Wilkening, Stefan Drechsel, Marion Hemminki, Kari BMC Res Notes Technical Note BACKGROUND: Single nucleotide polymorphism (SNP) genotyping is a major activity in biomedical research. Scientists prefer to have a facile access to the results which may require conversions between data formats. First hand SNP data is often entered in or saved in the MS-Excel format, but this software lacks genetic and epidemiological related functions. A general tool to do basic genetic and epidemiological analysis and data conversion for MS-Excel is needed. FINDINGS: The SNP_tools package is prepared as an add-in for MS-Excel. The code is written in Visual Basic for Application, embedded in the Microsoft Office package. This add-in is an easy to use tool for users with basic computer knowledge (and requirements for basic statistical analysis). CONCLUSION: Our implementation for Microsoft Excel 2000-2007 in Microsoft Windows 2000, XP, Vista and Windows 7 beta can handle files in different formats and converts them into other formats. It is a free software. BioMed Central 2009-10-23 /pmc/articles/PMC2771038/ /pubmed/19852806 http://dx.doi.org/10.1186/1756-0500-2-214 Text en Copyright © 2009 Chen et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Technical Note
Chen, Bowang
Wilkening, Stefan
Drechsel, Marion
Hemminki, Kari
SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel
title SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel
title_full SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel
title_fullStr SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel
title_full_unstemmed SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel
title_short SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel
title_sort snp_tools: a compact tool package for analysis and conversion of genotype data for ms-excel
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771038/
https://www.ncbi.nlm.nih.gov/pubmed/19852806
http://dx.doi.org/10.1186/1756-0500-2-214
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