Cargando…

Inferring within-patient HIV-1 evolutionary dynamics under anti-HIV therapy using serial virus samples with vSPA

BACKGROUND: Analysis of within-patient HIV evolution under anti-HIV therapy is crucial to a better understanding the possible mechanisms of HIV drug-resistance acquisition. The high evolutionary rate of HIV allows us to trace its evolutionary process in real time by analyzing virus samples serially...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hasegawa, Naoki, Sugiura, Wataru, Shibata, Junko, Matsuda, Masakazu, Ren, Fengrong, Tanaka, Hiroshi
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2776027/ https://www.ncbi.nlm.nih.gov/pubmed/19863822 http://dx.doi.org/10.1186/1471-2105-10-360

Ejemplares similares

Change of Positive Selection Pressure on HIV-1 Envelope Gene Inferred by Early and Recent Samples
por: Yoshida, Izumi, et al.
Publicado: (2011)

Quasispecies Analyses of the HIV-1 Near-full-length Genome With Illumina MiSeq
por: Ode, Hirotaka, et al.
Publicado: (2015)

Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains
por: Buendia, Patricia, et al.
Publicado: (2009)

Inferring explicit weighted consensus networks to represent alternative evolutionary histories
por: Layeghifard, Mehdi, et al.
Publicado: (2013)

Bayesian phylogenetic inference of HIV latent lineage ages using serial sequences
por: Nagel, Anna A., et al.
Publicado: (2023)

Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE)
por: Vêncio, Ricardo ZN, et al.
Publicado: (2004)

Assessment of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors
por: Siegert, Sandra, et al.
Publicado: (2005)

Evolutionary rates at codon sites may be used to align sequences and infer protein domain function
por: Durand, Pierre M, et al.
Publicado: (2010)

The recombination dynamics of Staphylococcus aureus inferred from spA gene
por: Santos-Júnior, Célio D., et al.
Publicado: (2016)

Prevalence of Transmitted HIV Drug Resistance in Iran between 2010 and 2011
por: Jahanbakhsh, Fatemeh, et al.
Publicado: (2013)

Unique Flap Conformation in an HIV-1 Protease with High-Level Darunavir Resistance
por: Nakashima, Masaaki, et al.
Publicado: (2016)

Evolutionary triangulation: informing genetic association studies with evolutionary evidence
por: Huang, Minjun, et al.
Publicado: (2016)

Psychometric testing of the consequences of an HIV disclosure instrument in Mandarin: a cross-sectional study of persons living with HIV in Hunan, China
por: Xiao, Xueling, et al.
Publicado: (2018)

Spa /
Publicado: (2008)

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data
por: Poon, Art F. Y., et al.
Publicado: (2012)

Describing Engagement in the HIV Care Cascade: A Methodological Study
por: Jhuti, Diya, et al.
Publicado: (2023)

Data-driven inference for the spatial scan statistic
por: Almeida, Alexandre CL, et al.
Publicado: (2011)

Analytical characteristics and comparative evaluation of Aptima HIV-1 Quant Dx assay with Ampliprep/COBAS TaqMan HIV-1 test v2.0
por: Hatzakis, Angelos., et al.
Publicado: (2016)

Serial ChIP as a tool to investigate the co-localization or exclusion of proteins on plant genes
por: Xie, Zidian, et al.
Publicado: (2008)

Developing a competency-based curriculum in HIV for nursing schools in Haiti
por: Knebel, Elisa, et al.
Publicado: (2008)

Adapting an evidence-based HIV behavioral intervention for South African couples
por: Wechsberg, Wendee M, et al.
Publicado: (2015)

The Gap Procedure: for the identification of phylogenetic clusters in HIV-1 sequence data
por: Vrbik, Irene, et al.
Publicado: (2015)

spa Los avispones
por: Handke, Peter

spa El delator
por: O'flaherty, Liam

Woodhall Spa
Publicado: (1887)

The Spa Physician
Publicado: (1902)

HIV taken by STORM: Super-resolution fluorescence microscopy of a viral infection
por: Pereira, Cândida F, et al.
Publicado: (2012)

Next generation sequencing based in-house HIV genotyping method: validation report
por: Ayitewala, Alisen, et al.
Publicado: (2021)

In-house ELISA protocols for capsid p24 detection of diverse HIV isolates
por: Molina, Mariano A., et al.
Publicado: (2023)

A fast forward 3D connection algorithm for mitochondria and synapse segmentations from serial EM images
por: Li, Weifu, et al.
Publicado: (2018)

Inferring Stable Acquisition Durations for Applications of Perfusion Imaging in Oncology
por: Hobbs, Brian P, et al.
Publicado: (2015)

Dynamic interaction network inference from longitudinal microbiome data
por: Lugo-Martinez, Jose, et al.
Publicado: (2019)

Evolutionary concepts in biobanking - the BC BioLibrary
por: Watson, Peter H, et al.
Publicado: (2009)

Modeling of HIV/AIDS dynamic evolution using non-homogeneous semi-markov process
por: Dessie, Zelalem Getahun
Publicado: (2014)

Balancing efficiency, equity and feasibility of HIV treatment in South Africa – development of programmatic guidance
por: Baltussen, Rob, et al.
Publicado: (2013)

Functional networks inference from rule-based machine learning models
por: Lazzarini, Nicola, et al.
Publicado: (2016)

Coincidence analysis: a new method for causal inference in implementation science
por: Whitaker, Rebecca Garr, et al.
Publicado: (2020)

Using Bayesian inference to estimate plausible muscle forces in musculoskeletal models
por: Johnson, Russell T., et al.
Publicado: (2022)

A framework for integrating inferred movement behavior into disease risk models
por: Dougherty, Eric R., et al.
Publicado: (2022)

Inferring the impact of humanitarian responses on population mortality: methodological problems and proposals
por: Checchi, Francesco
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_84p6hsjeausiod0hpu018okj02