Cargando…

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

BACKGROUND: Large multigene sequence alignments have over recent years been increasingly employed for phylogenomic reconstruction of the eukaryote tree of life. Such supermatrices of sequence data are preferred over single gene alignments as they contain vastly more information about ancient sequenc...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kumar, Surendra, Skjæveland, Åsmund, Orr, Russell JS, Enger, Pål, Ruden, Torgeir, Mevik, Bjørn-Helge, Burki, Fabien, Botnen, Andreas, Shalchian-Tabrizi, Kamran
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2777179/ https://www.ncbi.nlm.nih.gov/pubmed/19863793 http://dx.doi.org/10.1186/1471-2105-10-357

Ejemplares similares

Phylogenomics Reshuffles the Eukaryotic Supergroups
por: Burki, Fabien, et al.
Publicado: (2007)

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
por: Kumar, Surendra, et al.
Publicado: (2011)

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
por: Chernomor, Olga, et al.
Publicado: (2016)

BIR Pipeline for Preparation of Phylogenomic Data
por: Kumar, Surendra, et al.
Publicado: (2015)

A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea
por: Aouad, Monique, et al.
Publicado: (2022)

Multigene Phylogeny of Choanozoa and the Origin of Animals
por: Shalchian-Tabrizi, Kamran, et al.
Publicado: (2008)

Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates
por: Burki, Fabien, et al.
Publicado: (2009)

Collodictyon—An Ancient Lineage in the Tree of Eukaryotes
por: Zhao, Sen, et al.
Publicado: (2012)

Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices
por: Lang, Jenna Morgan, et al.
Publicado: (2013)

SUMAC: Constructing Phylogenetic Supermatrices and Assessing Partially Decisive Taxon Coverage
por: Freyman, William A.
Publicado: (2015)

Selecting informative subsets of sparse supermatrices increases the chance to find correct trees
por: Misof, Bernhard, et al.
Publicado: (2013)

Single Cell Transcriptomics, Mega-Phylogeny, and the Genetic Basis of Morphological Innovations in Rhizaria
por: Krabberød, Anders K., et al.
Publicado: (2017)

BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data
por: Neumann, Ralf Stefan, et al.
Publicado: (2014)

Erratum for Orr et al., “Draft Genome Sequences of Two Unclassified Chitinophagaceae Bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples”
por: Orr, Russell J. S., et al.
Publicado: (2017)

Erratum for Orr et al., “Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples”
por: Orr, Russell J. S., et al.
Publicado: (2017)

Erratum for Orr et al., “Draft Genome Sequences of Two Unclassified Bacteria, Hydrogenophaga sp. Strains IBVHS1 and IBVHS2, Isolated from Environmental Samples”
por: Orr, Russell J. S., et al.
Publicado: (2017)

Draft Genome Sequences of Two Unclassified Chitinophagaceae Bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples
por: Orr, Russell J. S., et al.
Publicado: (2017)

Draft Genome Sequences of Two Unclassified Bacteria, Hydrogenophaga sp. Strains IBVHS1 and IBVHS2, Isolated from Environmental Samples
por: Orr, Russell J. S., et al.
Publicado: (2017)

Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples
por: Orr, Russell J. S., et al.
Publicado: (2017)

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships
por: Tice, Alexander K., et al.
Publicado: (2021)

Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA
por: Andresen, Ina J., et al.
Publicado: (2021)

New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
por: Strassert, Jürgen F H, et al.
Publicado: (2019)

Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution
por: Orr, Russell J. S., et al.
Publicado: (2018)

Correction to: Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution
por: Orr, Russell J. S., et al.
Publicado: (2018)

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists
por: Burki, Fabien, et al.
Publicado: (2010)

Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations
por: Bråte, Jon, et al.
Publicado: (2010)

Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum
por: Bråte, Jon, et al.
Publicado: (2015)

Pandemic: examining readiness for infectious disease outbreaks
por: Burki, Talha Khan
Publicado: (2020)

Massive expansion of the calpain gene family in unicellular eukaryotes
por: Zhao, Sen, et al.
Publicado: (2012)

Phylogenomic analyses data of the avian phylogenomics project
por: Jarvis, Erich D, et al.
Publicado: (2015)

Characterization of Nanoparticle Batch-To-Batch Variability
por: Mülhopt, Sonja, et al.
Publicado: (2018)

A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum
por: Minge, Marianne A, et al.
Publicado: (2010)

Batch By Batch Longitudinal Emittance Blowup MD
por: Mastoridis, T, et al.
Publicado: (2012)

LHCb commissioning and readiness for the first data
por: Voss, Helge
Publicado: (2009)

LHCb commissioning and readiness for first data
por: Voss, Helge
Publicado: (2010)

Hydrofluoric Acid and Other Impurities in Toxic Perfluorooctane Batches
por: Menz, Dirk-Henning, et al.
Publicado: (2019)

Radiolaria Divided into Polycystina and Spasmaria in Combined 18S and 28S rDNA Phylogeny
por: Krabberød, Anders K., et al.
Publicado: (2011)

Batch efficiency
por: Schwickerath, U, et al.
Publicado: (2009)

Batch Processing
por: Diwekar, Urmila
Publicado: (2014)

Characterization of heteropolymer collapse
por: Skjaeveland, O, et al.
Publicado: (1998)

Cannot write session to /tmp/vufind_sessions/sess_h94n03ucg3f0u3tikmro7bi2oj