FIGfams: yet another set of protein families

We present FIGfams, a new collection of over 100 000 protein families that are the product of manual curation and close strain comparison. Using the Subsystem approach the manual curation is carried out, ensuring a previously unattained degree of throughput and consistency. FIGfams are based on over...

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Detalles Bibliográficos
Autores principales: Meyer, Folker, Overbeek, Ross, Rodriguez, Alex
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Computational Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2777423/
https://www.ncbi.nlm.nih.gov/pubmed/19762480
http://dx.doi.org/10.1093/nar/gkp698
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author Meyer, Folker
Overbeek, Ross
Rodriguez, Alex
author_facet Meyer, Folker
Overbeek, Ross
Rodriguez, Alex
author_sort Meyer, Folker
collection PubMed
description We present FIGfams, a new collection of over 100 000 protein families that are the product of manual curation and close strain comparison. Using the Subsystem approach the manual curation is carried out, ensuring a previously unattained degree of throughput and consistency. FIGfams are based on over 950 000 manually annotated proteins and across many hundred Bacteria and Archaea. Associated with each FIGfam is a two-tiered, rapid, accurate decision procedure to determine family membership for new proteins. FIGfams are freely available under an open source license. These can be downloaded at ftp://ftp.theseed.org/FIGfams/. The web site for FIGfams is http://www.theseed.org/wiki/FIGfams/
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spelling pubmed-27774232009-11-16 FIGfams: yet another set of protein families Meyer, Folker Overbeek, Ross Rodriguez, Alex Nucleic Acids Res Computational Biology We present FIGfams, a new collection of over 100 000 protein families that are the product of manual curation and close strain comparison. Using the Subsystem approach the manual curation is carried out, ensuring a previously unattained degree of throughput and consistency. FIGfams are based on over 950 000 manually annotated proteins and across many hundred Bacteria and Archaea. Associated with each FIGfam is a two-tiered, rapid, accurate decision procedure to determine family membership for new proteins. FIGfams are freely available under an open source license. These can be downloaded at ftp://ftp.theseed.org/FIGfams/. The web site for FIGfams is http://www.theseed.org/wiki/FIGfams/ Oxford University Press 2009-11 2009-09-17 /pmc/articles/PMC2777423/ /pubmed/19762480 http://dx.doi.org/10.1093/nar/gkp698 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Computational Biology
Meyer, Folker
Overbeek, Ross
Rodriguez, Alex
FIGfams: yet another set of protein families
title FIGfams: yet another set of protein families
title_full FIGfams: yet another set of protein families
title_fullStr FIGfams: yet another set of protein families
title_full_unstemmed FIGfams: yet another set of protein families
title_short FIGfams: yet another set of protein families
title_sort figfams: yet another set of protein families
topic Computational Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2777423/
https://www.ncbi.nlm.nih.gov/pubmed/19762480
http://dx.doi.org/10.1093/nar/gkp698
work_keys_str_mv AT meyerfolker figfamsyetanothersetofproteinfamilies
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