A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome

Nucleosomes have position-specific functions in controlling gene expression. A complete systematic genome-wide reference map of absolute and relative nucleosome positions is needed to minimize potential confusion when referring to the function of individual nucleosomes (or nucleosome-free regions) a...

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Detalles Bibliográficos
Autores principales: Jiang, Cizhong, Pugh, B Franklin
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784324/
https://www.ncbi.nlm.nih.gov/pubmed/19814794
http://dx.doi.org/10.1186/gb-2009-10-10-r109
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author Jiang, Cizhong
Pugh, B Franklin
author_facet Jiang, Cizhong
Pugh, B Franklin
author_sort Jiang, Cizhong
collection PubMed
description Nucleosomes have position-specific functions in controlling gene expression. A complete systematic genome-wide reference map of absolute and relative nucleosome positions is needed to minimize potential confusion when referring to the function of individual nucleosomes (or nucleosome-free regions) across datasets. We compiled six high-resolution genome-wide maps of Saccharomyces cerevisiae nucleosome positions from multiple labs and detection platforms, and report new insights. Data downloads, reference position assignment software, queries, and a visualization browser are available online http://atlas.bx.psu.edu/.
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spelling pubmed-27843242009-11-27 A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome Jiang, Cizhong Pugh, B Franklin Genome Biol Software Nucleosomes have position-specific functions in controlling gene expression. A complete systematic genome-wide reference map of absolute and relative nucleosome positions is needed to minimize potential confusion when referring to the function of individual nucleosomes (or nucleosome-free regions) across datasets. We compiled six high-resolution genome-wide maps of Saccharomyces cerevisiae nucleosome positions from multiple labs and detection platforms, and report new insights. Data downloads, reference position assignment software, queries, and a visualization browser are available online http://atlas.bx.psu.edu/. BioMed Central 2009 2009-10-08 /pmc/articles/PMC2784324/ /pubmed/19814794 http://dx.doi.org/10.1186/gb-2009-10-10-r109 Text en Copyright ©2009 Jiang and Pugh.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Jiang, Cizhong
Pugh, B Franklin
A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
title A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
title_full A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
title_fullStr A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
title_full_unstemmed A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
title_short A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
title_sort compiled and systematic reference map of nucleosome positions across the saccharomyces cerevisiae genome
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784324/
https://www.ncbi.nlm.nih.gov/pubmed/19814794
http://dx.doi.org/10.1186/gb-2009-10-10-r109
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