Cargando…

Linear model for fast background subtraction in oligonucleotide microarrays

BACKGROUND: One important preprocessing step in the analysis of microarray data is background subtraction. In high-density oligonucleotide arrays this is recognized as a crucial step for the global performance of the data analysis from raw intensities to expression values. RESULTS: We propose here a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kroll, K Myriam, Barkema, Gerard T, Carlon, Enrico
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Software Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785812/ https://www.ncbi.nlm.nih.gov/pubmed/19917117 http://dx.doi.org/10.1186/1748-7188-4-15

Ejemplares similares

Inverse Langmuir method for oligonucleotide microarray analysis
por: Mulders, Geert CWM, et al.
Publicado: (2009)

DBNorm: normalizing high-density oligonucleotide microarray data based on distributions
por: Meng, Qinxue, et al.
Publicado: (2017)

MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
por: Rouchka, Eric C, et al.
Publicado: (2005)

R/BHC: fast Bayesian hierarchical clustering for microarray data
por: Savage, Richard S, et al.
Publicado: (2009)

Fast Gene Ontology based clustering for microarray experiments
por: Ovaska, Kristian, et al.
Publicado: (2008)

A distribution-free convolution model for background correction of oligonucleotide microarray data
por: Chen, Zhongxue, et al.
Publicado: (2009)

Eureka-DMA: an easy-to-operate graphical user interface for fast comprehensive investigation and analysis of DNA microarray data
por: Abelson, Sagi
Publicado: (2014)

Asynchronous Semantic Background Subtraction
por: Cioppa, Anthony, et al.
Publicado: (2020)

GWAS on your notebook: fast semi-parallel linear and logistic regression for genome-wide association studies
por: Sikorska, Karolina, et al.
Publicado: (2013)

Background subtraction for night videos
por: Pan, Hongpeng, et al.
Publicado: (2021)

Weighting Background-Subtracted Events
por: Linnemann, James T, et al.
Publicado: (2008)

ProbeMaker: an extensible framework for design of sets of oligonucleotide probes
por: Stenberg, Johan, et al.
Publicado: (2005)

SAG-QC: quality control of single amplified genome information by subtracting non-target sequences based on sequence compositions
por: Maruyama, Toru, et al.
Publicado: (2017)

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
por: Glaab, Enrico, et al.
Publicado: (2009)

VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology
por: Rizwan, Muhammad, et al.
Publicado: (2017)

Generation of non-genomic oligonucleotide tag sequences for RNA template-specific PCR
por: Pinto, Fernando Lopes, et al.
Publicado: (2006)

Comparative linkage analysis and visualization of high-density oligonucleotide SNP array data
por: Leykin, Igor, et al.
Publicado: (2005)

MPDA: Microarray pooled DNA analyzer
por: Yang, Hsin-Chou, et al.
Publicado: (2008)

The dChip survival analysis module for microarray data
por: Amin, Samir B, et al.
Publicado: (2011)

Background Subtraction from the Dilepton Spectra
por: Gazdzicki, Marek, et al.
Publicado: (2000)

Medium Recoils and background subtraction in JEWEL
por: Kunnawalkam Elayavalli, Raghav, et al.
Publicado: (2016)

ArrayD: A general purpose software for Microarray design
por: Sharma, Anu, et al.
Publicado: (2004)

Automated FingerPrint Background removal: FPB
por: Scalabrin, Simone, et al.
Publicado: (2009)

TAMEE: data management and analysis for tissue microarrays
por: Thallinger, Gerhard G, et al.
Publicado: (2007)

MARS: Microarray analysis, retrieval, and storage system
por: Maurer, Michael, et al.
Publicado: (2005)

Workflows for microarray data processing in the Kepler environment
por: Stropp, Thomas, et al.
Publicado: (2012)

Equalizer reduces SNP bias in Affymetrix microarrays
por: Quigley, David
Publicado: (2015)

Fast Estimation of L1-Regularized Linear Models in the Mass-Univariate Setting
por: Mohr, Holger, et al.
Publicado: (2020)

A software framework for microarray and gene expression object model (MAGE-OM) array design annotation
por: Qureshi, Matloob, et al.
Publicado: (2008)

A Java-based tool for the design of classification microarrays
por: Meng, Da, et al.
Publicado: (2008)

EXPANDER – an integrative program suite for microarray data analysis
por: Shamir, Ron, et al.
Publicado: (2005)

WebArray: an online platform for microarray data analysis
por: Xia, Xiaoqin, et al.
Publicado: (2005)

Storing, linking, and mining microarray databases using SRS
por: Veldhoven, Antoine, et al.
Publicado: (2005)

SIMAGE: simulation of DNA-microarray gene expression data
por: Albers, Casper J, et al.
Publicado: (2006)

AMDA: an R package for the automated microarray data analysis
por: Pelizzola, Mattia, et al.
Publicado: (2006)

Visualization and analysis of microarray and gene ontology data with treemaps
por: Baehrecke, Eric H, et al.
Publicado: (2004)

M-CGH: Analysing microarray-based CGH experiments
por: Wang, Junbai, et al.
Publicado: (2004)

SEURAT: Visual analytics for the integrated analysis of microarray data
por: Gribov, Alexander, et al.
Publicado: (2010)

HOMO: A novel script for data mining of microarrays
por: Garcia-Chequer, Adda Jeanette, et al.
Publicado: (2013)

proMAD: semiquantitative densitometric measurement of protein microarrays
por: Jaeschke, Anna, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_69tr5tmrnn9soj20cuf1u9ctsr