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Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta
BACKGROUND: Cloning of the Euonymus lectin led to the discovery of a novel domain that also occurs in some stress-induced plant proteins. The distribution and the diversity of proteins with an Euonymus lectin (EUL) domain were investigated using detailed analysis of sequences in publicly accessible...
Autores principales: | , , , , |
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Formato: | Texto |
Lenguaje: | English |
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BioMed Central
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788552/ https://www.ncbi.nlm.nih.gov/pubmed/19930663 http://dx.doi.org/10.1186/1471-2229-9-136 |
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author | Fouquaert, Elke Peumans, Willy J Vandekerckhove, Tom TM Ongenaert, Maté Van Damme, Els JM |
author_facet | Fouquaert, Elke Peumans, Willy J Vandekerckhove, Tom TM Ongenaert, Maté Van Damme, Els JM |
author_sort | Fouquaert, Elke |
collection | PubMed |
description | BACKGROUND: Cloning of the Euonymus lectin led to the discovery of a novel domain that also occurs in some stress-induced plant proteins. The distribution and the diversity of proteins with an Euonymus lectin (EUL) domain were investigated using detailed analysis of sequences in publicly accessible genome and transcriptome databases. RESULTS: Comprehensive in silico analyses indicate that the recently identified Euonymus europaeus lectin domain represents a conserved structural unit of a novel family of putative carbohydrate-binding proteins, which will further be referred to as the Euonymus lectin (EUL) family. The EUL domain is widespread among plants. Analysis of retrieved sequences revealed that some sequences consist of a single EUL domain linked to an unrelated N-terminal domain whereas others comprise two in tandem arrayed EUL domains. A new classification system for these lectins is proposed based on the overall domain architecture. Evolutionary relationships among the sequences with EUL domains are discussed. CONCLUSION: The identification of the EUL family provides the first evidence for the occurrence in terrestrial plants of a highly conserved plant specific domain. The widespread distribution of the EUL domain strikingly contrasts the more limited or even narrow distribution of most other lectin domains found in plants. The apparent omnipresence of the EUL domain is indicative for a universal role of this lectin domain in plants. Although there is unambiguous evidence that several EUL domains possess carbohydrate-binding activity further research is required to corroborate the carbohydrate-binding properties of different members of the EUL family. |
format | Text |
id | pubmed-2788552 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-27885522009-12-04 Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta Fouquaert, Elke Peumans, Willy J Vandekerckhove, Tom TM Ongenaert, Maté Van Damme, Els JM BMC Plant Biol Research article BACKGROUND: Cloning of the Euonymus lectin led to the discovery of a novel domain that also occurs in some stress-induced plant proteins. The distribution and the diversity of proteins with an Euonymus lectin (EUL) domain were investigated using detailed analysis of sequences in publicly accessible genome and transcriptome databases. RESULTS: Comprehensive in silico analyses indicate that the recently identified Euonymus europaeus lectin domain represents a conserved structural unit of a novel family of putative carbohydrate-binding proteins, which will further be referred to as the Euonymus lectin (EUL) family. The EUL domain is widespread among plants. Analysis of retrieved sequences revealed that some sequences consist of a single EUL domain linked to an unrelated N-terminal domain whereas others comprise two in tandem arrayed EUL domains. A new classification system for these lectins is proposed based on the overall domain architecture. Evolutionary relationships among the sequences with EUL domains are discussed. CONCLUSION: The identification of the EUL family provides the first evidence for the occurrence in terrestrial plants of a highly conserved plant specific domain. The widespread distribution of the EUL domain strikingly contrasts the more limited or even narrow distribution of most other lectin domains found in plants. The apparent omnipresence of the EUL domain is indicative for a universal role of this lectin domain in plants. Although there is unambiguous evidence that several EUL domains possess carbohydrate-binding activity further research is required to corroborate the carbohydrate-binding properties of different members of the EUL family. BioMed Central 2009-11-23 /pmc/articles/PMC2788552/ /pubmed/19930663 http://dx.doi.org/10.1186/1471-2229-9-136 Text en Copyright ©2009 Fouquaert et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research article Fouquaert, Elke Peumans, Willy J Vandekerckhove, Tom TM Ongenaert, Maté Van Damme, Els JM Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta |
title | Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta |
title_full | Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta |
title_fullStr | Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta |
title_full_unstemmed | Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta |
title_short | Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta |
title_sort | proteins with an euonymus lectin-like domain are ubiquitous in embryophyta |
topic | Research article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788552/ https://www.ncbi.nlm.nih.gov/pubmed/19930663 http://dx.doi.org/10.1186/1471-2229-9-136 |
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