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CRISPI: a CRISPR interactive database

Summary: The CRISPR genomic structures (Clustered Regularly Interspaced Short Palindromic Repeats) form a family of repeats that is largely present in archaea and frequent in bacteria. On the basis of a formal model of CRISPR using very few parameters, a systematic study of all their occurrences in...

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Detalles Bibliográficos
Autores principales: Rousseau, Christine, Gonnet, Mathieu, Le Romancer, Marc, Nicolas, Jacques
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788928/
https://www.ncbi.nlm.nih.gov/pubmed/19846435
http://dx.doi.org/10.1093/bioinformatics/btp586
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author Rousseau, Christine
Gonnet, Mathieu
Le Romancer, Marc
Nicolas, Jacques
author_facet Rousseau, Christine
Gonnet, Mathieu
Le Romancer, Marc
Nicolas, Jacques
author_sort Rousseau, Christine
collection PubMed
description Summary: The CRISPR genomic structures (Clustered Regularly Interspaced Short Palindromic Repeats) form a family of repeats that is largely present in archaea and frequent in bacteria. On the basis of a formal model of CRISPR using very few parameters, a systematic study of all their occurrences in all available genomes of Archaea and Bacteria has been carried out. This has resulted in a relational database, CRISPI, which also includes a complete repertory of associated CRISPR-associated genes (CAS). A user-friendly web interface with many graphical tools and functions allows users to extract results, find CRISPR in personal sequences or calculate sequence similarity with spacers. Availability: CRISPI free access at http://crispi.genouest.org Contact: croussea@irisa.fr; jnicolas@irisa.fr;
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spelling pubmed-27889282009-12-07 CRISPI: a CRISPR interactive database Rousseau, Christine Gonnet, Mathieu Le Romancer, Marc Nicolas, Jacques Bioinformatics Applications Note Summary: The CRISPR genomic structures (Clustered Regularly Interspaced Short Palindromic Repeats) form a family of repeats that is largely present in archaea and frequent in bacteria. On the basis of a formal model of CRISPR using very few parameters, a systematic study of all their occurrences in all available genomes of Archaea and Bacteria has been carried out. This has resulted in a relational database, CRISPI, which also includes a complete repertory of associated CRISPR-associated genes (CAS). A user-friendly web interface with many graphical tools and functions allows users to extract results, find CRISPR in personal sequences or calculate sequence similarity with spacers. Availability: CRISPI free access at http://crispi.genouest.org Contact: croussea@irisa.fr; jnicolas@irisa.fr; Oxford University Press 2009-12-15 2009-10-21 /pmc/articles/PMC2788928/ /pubmed/19846435 http://dx.doi.org/10.1093/bioinformatics/btp586 Text en http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Rousseau, Christine
Gonnet, Mathieu
Le Romancer, Marc
Nicolas, Jacques
CRISPI: a CRISPR interactive database
title CRISPI: a CRISPR interactive database
title_full CRISPI: a CRISPR interactive database
title_fullStr CRISPI: a CRISPR interactive database
title_full_unstemmed CRISPI: a CRISPR interactive database
title_short CRISPI: a CRISPR interactive database
title_sort crispi: a crispr interactive database
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788928/
https://www.ncbi.nlm.nih.gov/pubmed/19846435
http://dx.doi.org/10.1093/bioinformatics/btp586
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AT nicolasjacques crispiacrisprinteractivedatabase