Cargando…

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto

Summary: NAViGaTOR is a powerful graphing application for the 2D and 3D visualization of biological networks. NAViGaTOR includes a rich suite of visual mark-up tools for manual and automated annotation, fast and scalable layout algorithms and OpenGL hardware acceleration to facilitate the visualizat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Brown, Kevin R., Otasek, David, Ali, Muhammad, McGuffin, Michael J., Xie, Wing, Devani, Baiju, van Toch, Ian Lawson, Jurisica, Igor
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2009
Materias:	Applications Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788933/ https://www.ncbi.nlm.nih.gov/pubmed/19837718 http://dx.doi.org/10.1093/bioinformatics/btp595

Ejemplares similares

NAViGaTing the Micronome – Using Multiple MicroRNA Prediction Databases to Identify Signalling Pathway-Associated MicroRNAs
por: Shirdel, Elize A., et al.
Publicado: (2011)

GSOAP: a tool for visualization of gene set over-representation analysis
por: Tokar, Tomas, et al.
Publicado: (2020)

CovidGraph: a graph to fight COVID-19
por: Gütebier, Lea, et al.
Publicado: (2022)

Cytoscape.js 2023 update: a graph theory library for visualization and analysis
por: Franz, Max, et al.
Publicado: (2023)

graph2tab, a library to convert experimental workflow graphs into tabular formats
por: Brandizi, Marco, et al.
Publicado: (2012)

Visual Omics: a web-based platform for omics data analysis and visualization with rich graph-tuning capabilities
por: Li, Heng, et al.
Publicado: (2022)

MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization
por: Blum, Torsten, et al.
Publicado: (2008)

Robust quantitative scratch assay
por: Vargas, Andrea, et al.
Publicado: (2016)

CRONOS: the cross-reference navigation server
por: Waegele, Brigitte, et al.
Publicado: (2009)

graphkernels: R and Python packages for graph comparison
por: Sugiyama, Mahito, et al.
Publicado: (2018)

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce
por: Nellore, Abhinav, et al.
Publicado: (2016)

admixturegraph: an R package for admixture graph manipulation and fitting
por: Leppälä, Kalle, et al.
Publicado: (2017)

BubbleGun: enumerating bubbles and superbubbles in genome graphs
por: Dabbaghie, Fawaz, et al.
Publicado: (2022)

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor
por: Zhang, Jitao David, et al.
Publicado: (2009)

Cytoscape.js: a graph theory library for visualisation and analysis
por: Franz, Max, et al.
Publicado: (2016)

Sequence tube maps: making graph genomes intuitive to commuters
por: Beyer, Wolfgang, et al.
Publicado: (2019)

EpiGraph: an open-source platform to quantify epithelial organization
por: Vicente-Munuera, Pablo, et al.
Publicado: (2020)

MBG: Minimizer-based sparse de Bruijn Graph construction
por: Rautiainen, Mikko, et al.
Publicado: (2021)

HyperGraphs.jl: representing higher-order relationships in Julia
por: Diaz, Léo P M, et al.
Publicado: (2022)

HLA*LA—HLA typing from linearly projected graph alignments
por: Dilthey, Alexander T, et al.
Publicado: (2019)

Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs
por: Formenti, Giulio, et al.
Publicado: (2022)

Metapaths: similarity search in heterogeneous knowledge graphs via meta-paths
por: Noori, Ayush, et al.
Publicado: (2023)

BondGraphs.jl: composable energy-based modelling in systems biology
por: Forrest, Joshua, et al.
Publicado: (2023)

ChromoHub: a data hub for navigators of chromatin-mediated signalling
por: Liu, Lihua, et al.
Publicado: (2012)

Navigating protected genomics data with UCSC Genome Browser in a Box
por: Haeussler, Maximilian, et al.
Publicado: (2015)

gplas: a comprehensive tool for plasmid analysis using short-read graphs
por: Arredondo-Alonso, Sergio, et al.
Publicado: (2020)

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs
por: Coombe, Lauren, et al.
Publicado: (2020)

ROBOKOP: an abstraction layer and user interface for knowledge graphs to support question answering
por: Morton, Kenneth, et al.
Publicado: (2019)

COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases
por: Chen, Chuming, et al.
Publicado: (2021)

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT
por: Lacroix, Thomas, et al.
Publicado: (2016)

γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites
por: Calabria, Andrea, et al.
Publicado: (2020)

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data
por: Nair, Sreenath, et al.
Publicado: (2021)

Single-cell gene set scoring with nearest neighbor graph smoothed data (gssnng)
por: Gibbs, David L, et al.
Publicado: (2023)

RDBridge: a knowledge graph of rare diseases based on large-scale text mining
por: Xing, Huadong, et al.
Publicado: (2023)

DNA Compass: a secure, client-side site for navigating personal genetic information
por: Curnin, Charles, et al.
Publicado: (2017)

StonPy: a tool to parse and query collections of SBGN maps in a graph database
por: Rougny, Adrien, et al.
Publicado: (2023)

libSBOLj3: a graph-based library for design and data exchange in synthetic biology
por: Mısırlı, Göksel
Publicado: (2023)

Mpox Knowledge Graph: a comprehensive representation embedding chemical entities and associated biology of Mpox
por: Karki, Reagon, et al.
Publicado: (2023)

Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification
por: Pfeifer, Bastian, et al.
Publicado: (2023)

pyBedGraph: a python package for fast operations on 1D genomic signal tracks
por: Zhang, Henry B, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_guiougevnrqhq4t1brmo0524ma