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Modeling lymphocyte homing and encounters in lymph nodes

BACKGROUND: The efficiency of lymph nodes depends on tissue structure and organization, which allow the coordination of lymphocyte traffic. Despite their essential role, our understanding of lymph node specific mechanisms is still incomplete and currently a topic of intense research. RESULTS: In thi...

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Autores principales: Baldazzi, Valentina, Paci, Paola, Bernaschi, Massimo, Castiglione, Filippo
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790470/
https://www.ncbi.nlm.nih.gov/pubmed/19939270
http://dx.doi.org/10.1186/1471-2105-10-387
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author Baldazzi, Valentina
Paci, Paola
Bernaschi, Massimo
Castiglione, Filippo
author_facet Baldazzi, Valentina
Paci, Paola
Bernaschi, Massimo
Castiglione, Filippo
author_sort Baldazzi, Valentina
collection PubMed
description BACKGROUND: The efficiency of lymph nodes depends on tissue structure and organization, which allow the coordination of lymphocyte traffic. Despite their essential role, our understanding of lymph node specific mechanisms is still incomplete and currently a topic of intense research. RESULTS: In this paper, we present a hybrid discrete/continuous model of the lymph node, accounting for differences in cell velocity and chemotactic response, influenced by the spatial compartmentalization of the lymph node and the regulation of cells migration, encounter, and antigen presentation during the inflammation process. CONCLUSION: Our model reproduces the correct timing of an immune response, including the observed time delay between duplication of T helper cells and duplication of B cells in response to antigen exposure. Furthermore, we investigate the consequences of the absence of dendritic cells at different times during infection, and the dependence of system dynamics on the regulation of lymphocyte exit from lymph nodes. In both cases, the model predicts the emergence of an impaired immune response, i.e., the response is significantly reduced in magnitude. Dendritic cell removal is also shown to delay the response time with respect to normal conditions.
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spelling pubmed-27904702009-12-09 Modeling lymphocyte homing and encounters in lymph nodes Baldazzi, Valentina Paci, Paola Bernaschi, Massimo Castiglione, Filippo BMC Bioinformatics Methodology article BACKGROUND: The efficiency of lymph nodes depends on tissue structure and organization, which allow the coordination of lymphocyte traffic. Despite their essential role, our understanding of lymph node specific mechanisms is still incomplete and currently a topic of intense research. RESULTS: In this paper, we present a hybrid discrete/continuous model of the lymph node, accounting for differences in cell velocity and chemotactic response, influenced by the spatial compartmentalization of the lymph node and the regulation of cells migration, encounter, and antigen presentation during the inflammation process. CONCLUSION: Our model reproduces the correct timing of an immune response, including the observed time delay between duplication of T helper cells and duplication of B cells in response to antigen exposure. Furthermore, we investigate the consequences of the absence of dendritic cells at different times during infection, and the dependence of system dynamics on the regulation of lymphocyte exit from lymph nodes. In both cases, the model predicts the emergence of an impaired immune response, i.e., the response is significantly reduced in magnitude. Dendritic cell removal is also shown to delay the response time with respect to normal conditions. BioMed Central 2009-11-25 /pmc/articles/PMC2790470/ /pubmed/19939270 http://dx.doi.org/10.1186/1471-2105-10-387 Text en Copyright ©2009 Baldazzi et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methodology article
Baldazzi, Valentina
Paci, Paola
Bernaschi, Massimo
Castiglione, Filippo
Modeling lymphocyte homing and encounters in lymph nodes
title Modeling lymphocyte homing and encounters in lymph nodes
title_full Modeling lymphocyte homing and encounters in lymph nodes
title_fullStr Modeling lymphocyte homing and encounters in lymph nodes
title_full_unstemmed Modeling lymphocyte homing and encounters in lymph nodes
title_short Modeling lymphocyte homing and encounters in lymph nodes
title_sort modeling lymphocyte homing and encounters in lymph nodes
topic Methodology article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790470/
https://www.ncbi.nlm.nih.gov/pubmed/19939270
http://dx.doi.org/10.1186/1471-2105-10-387
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