Cargando…

454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides

BACKGROUND: An essential driving component in the co-evolution of plants and insects is the ability to produce and handle bioactive compounds. Plants produce bioactive natural products for defense, but some insects detoxify and/or sequester the compounds, opening up for new niches with fewer competi...

Descripción completa

Detalles Bibliográficos
Autores principales: Zagrobelny, Mika, Scheibye-Alsing, Karsten, Jensen, Niels Bjerg, Møller, Birger Lindberg, Gorodkin, Jan, Bak, Søren
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2791780/
https://www.ncbi.nlm.nih.gov/pubmed/19954531
http://dx.doi.org/10.1186/1471-2164-10-574
_version_ 1782175203029155840
author Zagrobelny, Mika
Scheibye-Alsing, Karsten
Jensen, Niels Bjerg
Møller, Birger Lindberg
Gorodkin, Jan
Bak, Søren
author_facet Zagrobelny, Mika
Scheibye-Alsing, Karsten
Jensen, Niels Bjerg
Møller, Birger Lindberg
Gorodkin, Jan
Bak, Søren
author_sort Zagrobelny, Mika
collection PubMed
description BACKGROUND: An essential driving component in the co-evolution of plants and insects is the ability to produce and handle bioactive compounds. Plants produce bioactive natural products for defense, but some insects detoxify and/or sequester the compounds, opening up for new niches with fewer competitors. To study the molecular mechanism behind the co-adaption in plant-insect interactions, we have investigated the interactions between Lotus corniculatus and Zygaena filipendulae. They both contain cyanogenic glucosides which liberate toxic hydrogen cyanide upon breakdown. Moths belonging to the Zygaena family are the only insects known, able to carry out both de novo biosynthesis and sequestration of the same cyanogenic glucosides as those from their feed plants. The biosynthetic pathway for cyanogenic glucoside biosynthesis in Z. filipendulae proceeds using the same intermediates as in the well known pathway from plants, but none of the enzymes responsible have been identified. A genomics strategy founded on 454 pyrosequencing of the Z. filipendulae transcriptome was undertaken to identify some of these enzymes in Z. filipendulae. RESULTS: Comparisons of the Z. filipendulae transcriptome with the sequenced genomes of Bombyx mori, Drosophila melanogaster, Tribolium castaneum, Apis mellifera and Anopheles gambiae indicate a high coverage of the Z. filipendulae transcriptome. 11% of the Z. filipendulae transcriptome sequences were assigned to Gene Ontology categories. Candidate genes for enzymes functioning in the biosynthesis of cyanogenic glucosides (cytochrome P450 and family 1 glycosyltransferases) were identified based on sequence length, number of copies and presence/absence of close homologs in D. melanogaster, B. mori and the cyanogenic butterfly Heliconius. Examination of biased codon usage, GC content and selection on gene candidates support the notion of cyanogenesis as an "old" trait within Ditrysia, as well as its origins being convergent between plants and insects. CONCLUSION: Pyrosequencing is an attractive approach to gain access to genes in the biosynthesis of bio-active natural products from insects and other organisms, for which the genome sequence is not known. Based on analysis of the Z. filipendulae transcriptome, promising gene candidates for biosynthesis of cyanogenic glucosides was identified, and the suitability of Z. filipendulae as a model system for cyanogenesis in insects is evident.
format Text
id pubmed-2791780
institution National Center for Biotechnology Information
language English
publishDate 2009
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-27917802009-12-11 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides Zagrobelny, Mika Scheibye-Alsing, Karsten Jensen, Niels Bjerg Møller, Birger Lindberg Gorodkin, Jan Bak, Søren BMC Genomics Research article BACKGROUND: An essential driving component in the co-evolution of plants and insects is the ability to produce and handle bioactive compounds. Plants produce bioactive natural products for defense, but some insects detoxify and/or sequester the compounds, opening up for new niches with fewer competitors. To study the molecular mechanism behind the co-adaption in plant-insect interactions, we have investigated the interactions between Lotus corniculatus and Zygaena filipendulae. They both contain cyanogenic glucosides which liberate toxic hydrogen cyanide upon breakdown. Moths belonging to the Zygaena family are the only insects known, able to carry out both de novo biosynthesis and sequestration of the same cyanogenic glucosides as those from their feed plants. The biosynthetic pathway for cyanogenic glucoside biosynthesis in Z. filipendulae proceeds using the same intermediates as in the well known pathway from plants, but none of the enzymes responsible have been identified. A genomics strategy founded on 454 pyrosequencing of the Z. filipendulae transcriptome was undertaken to identify some of these enzymes in Z. filipendulae. RESULTS: Comparisons of the Z. filipendulae transcriptome with the sequenced genomes of Bombyx mori, Drosophila melanogaster, Tribolium castaneum, Apis mellifera and Anopheles gambiae indicate a high coverage of the Z. filipendulae transcriptome. 11% of the Z. filipendulae transcriptome sequences were assigned to Gene Ontology categories. Candidate genes for enzymes functioning in the biosynthesis of cyanogenic glucosides (cytochrome P450 and family 1 glycosyltransferases) were identified based on sequence length, number of copies and presence/absence of close homologs in D. melanogaster, B. mori and the cyanogenic butterfly Heliconius. Examination of biased codon usage, GC content and selection on gene candidates support the notion of cyanogenesis as an "old" trait within Ditrysia, as well as its origins being convergent between plants and insects. CONCLUSION: Pyrosequencing is an attractive approach to gain access to genes in the biosynthesis of bio-active natural products from insects and other organisms, for which the genome sequence is not known. Based on analysis of the Z. filipendulae transcriptome, promising gene candidates for biosynthesis of cyanogenic glucosides was identified, and the suitability of Z. filipendulae as a model system for cyanogenesis in insects is evident. BioMed Central 2009-12-02 /pmc/articles/PMC2791780/ /pubmed/19954531 http://dx.doi.org/10.1186/1471-2164-10-574 Text en Copyright ©2009 Zagrobelny et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research article
Zagrobelny, Mika
Scheibye-Alsing, Karsten
Jensen, Niels Bjerg
Møller, Birger Lindberg
Gorodkin, Jan
Bak, Søren
454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
title 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
title_full 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
title_fullStr 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
title_full_unstemmed 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
title_short 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
title_sort 454 pyrosequencing based transcriptome analysis of zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
topic Research article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2791780/
https://www.ncbi.nlm.nih.gov/pubmed/19954531
http://dx.doi.org/10.1186/1471-2164-10-574
work_keys_str_mv AT zagrobelnymika 454pyrosequencingbasedtranscriptomeanalysisofzygaenafilipendulaewithfocusongenesinvolvedinbiosynthesisofcyanogenicglucosides
AT scheibyealsingkarsten 454pyrosequencingbasedtranscriptomeanalysisofzygaenafilipendulaewithfocusongenesinvolvedinbiosynthesisofcyanogenicglucosides
AT jensennielsbjerg 454pyrosequencingbasedtranscriptomeanalysisofzygaenafilipendulaewithfocusongenesinvolvedinbiosynthesisofcyanogenicglucosides
AT møllerbirgerlindberg 454pyrosequencingbasedtranscriptomeanalysisofzygaenafilipendulaewithfocusongenesinvolvedinbiosynthesisofcyanogenicglucosides
AT gorodkinjan 454pyrosequencingbasedtranscriptomeanalysisofzygaenafilipendulaewithfocusongenesinvolvedinbiosynthesisofcyanogenicglucosides
AT baksøren 454pyrosequencingbasedtranscriptomeanalysisofzygaenafilipendulaewithfocusongenesinvolvedinbiosynthesisofcyanogenicglucosides