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QuickGO: a user tutorial for the web-based Gene Ontology browser

The Gene Ontology (GO) has proven to be a valuable resource for functional annotation of gene products. At well over 27 000 terms, the descriptiveness of GO has increased rapidly in line with the biological data it represents. Therefore, it is vital to be able to easily and quickly mine the function...

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Detalles Bibliográficos
Autores principales: Huntley, Rachael P., Binns, David, Dimmer, Emily, Barrell, Daniel, O’Donovan, Claire, Apweiler, Rolf
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2794795/
https://www.ncbi.nlm.nih.gov/pubmed/20157483
http://dx.doi.org/10.1093/database/bap010
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author Huntley, Rachael P.
Binns, David
Dimmer, Emily
Barrell, Daniel
O’Donovan, Claire
Apweiler, Rolf
author_facet Huntley, Rachael P.
Binns, David
Dimmer, Emily
Barrell, Daniel
O’Donovan, Claire
Apweiler, Rolf
author_sort Huntley, Rachael P.
collection PubMed
description The Gene Ontology (GO) has proven to be a valuable resource for functional annotation of gene products. At well over 27 000 terms, the descriptiveness of GO has increased rapidly in line with the biological data it represents. Therefore, it is vital to be able to easily and quickly mine the functional information that has been made available through these GO terms being associated with gene products. QuickGO is a fast, web-based tool for browsing the GO and all associated GO annotations provided by the GOA group. After undergoing a redevelopment, QuickGO is now able to offer many more features beyond simple browsing. Users have responded well to the new tool and given very positive feedback about its usefulness. This tutorial will demonstrate how some of these features could be useful to the researcher wanting to discover more about their dataset, particular areas of biology or to find new ways of directing their research. Database URL: http://www.ebi.ac.uk/QuickGO
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spelling pubmed-27947952009-12-16 QuickGO: a user tutorial for the web-based Gene Ontology browser Huntley, Rachael P. Binns, David Dimmer, Emily Barrell, Daniel O’Donovan, Claire Apweiler, Rolf Database (Oxford) Tutorial The Gene Ontology (GO) has proven to be a valuable resource for functional annotation of gene products. At well over 27 000 terms, the descriptiveness of GO has increased rapidly in line with the biological data it represents. Therefore, it is vital to be able to easily and quickly mine the functional information that has been made available through these GO terms being associated with gene products. QuickGO is a fast, web-based tool for browsing the GO and all associated GO annotations provided by the GOA group. After undergoing a redevelopment, QuickGO is now able to offer many more features beyond simple browsing. Users have responded well to the new tool and given very positive feedback about its usefulness. This tutorial will demonstrate how some of these features could be useful to the researcher wanting to discover more about their dataset, particular areas of biology or to find new ways of directing their research. Database URL: http://www.ebi.ac.uk/QuickGO Oxford University Press 2009 2009-09-29 /pmc/articles/PMC2794795/ /pubmed/20157483 http://dx.doi.org/10.1093/database/bap010 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5/uk/ This is Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Tutorial
Huntley, Rachael P.
Binns, David
Dimmer, Emily
Barrell, Daniel
O’Donovan, Claire
Apweiler, Rolf
QuickGO: a user tutorial for the web-based Gene Ontology browser
title QuickGO: a user tutorial for the web-based Gene Ontology browser
title_full QuickGO: a user tutorial for the web-based Gene Ontology browser
title_fullStr QuickGO: a user tutorial for the web-based Gene Ontology browser
title_full_unstemmed QuickGO: a user tutorial for the web-based Gene Ontology browser
title_short QuickGO: a user tutorial for the web-based Gene Ontology browser
title_sort quickgo: a user tutorial for the web-based gene ontology browser
topic Tutorial
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2794795/
https://www.ncbi.nlm.nih.gov/pubmed/20157483
http://dx.doi.org/10.1093/database/bap010
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