Cargando…

Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers

A newly developed maize Illumina GoldenGate Assay with 1536 SNPs from 582 loci was used to genotype a highly diverse global maize collection of 632 inbred lines from temperate, tropical, and subtropical public breeding programs. A total of 1229 informative SNPs and 1749 haplotypes within 327 loci wa...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yan, Jianbing, Shah, Trushar, Warburton, Marilyn L., Buckler, Edward S., McMullen, Michael D., Crouch, Jonathan
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2009
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795174/ https://www.ncbi.nlm.nih.gov/pubmed/20041112 http://dx.doi.org/10.1371/journal.pone.0008451

Ejemplares similares

SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines
por: Ching, Ada, et al.
Publicado: (2002)

Bayesian estimates of linkage disequilibrium
por: Sebastiani, Paola, et al.
Publicado: (2007)

Characterization of Genetic Diversity and Linkage Disequilibrium of ZmLOX4 and ZmLOX5 Loci in Maize
por: De La Fuente, Gerald N., et al.
Publicado: (2013)

The effects of linkage disequilibrium in large scale SNP datasets for MDR
por: Grady, Benjamin J, et al.
Publicado: (2011)

Linkage Disequilibrium Estimation of Chinese Beef Simmental Cattle Using High-density SNP Panels
por: Zhu, M., et al.
Publicado: (2013)

PIP-SNP: a pipeline for processing SNP data featured as linkage disequilibrium bin mapping, genotype imputing and marker synthesizing
por: Zhang, Wenchao, et al.
Publicado: (2021)

Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus
por: Bush, William S., et al.
Publicado: (2010)

A novel linkage-disequilibrium corrected genomic relationship matrix for SNP-heritability estimation and genomic prediction
por: Mathew, Boby, et al.
Publicado: (2017)

Linkage disequilibrium of single-nucleotide polymorphism data: how sampling methods affect estimates of linkage disequilibrium
por: He, Qimei, et al.
Publicado: (2009)

FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium
por: Liu, Guimei, et al.
Publicado: (2010)

Genetic Diversity, Linkage Disequilibrium and Selection Signatures in Chinese and Western Pigs Revealed by Genome-Wide SNP Markers
por: Ai, Huashui, et al.
Publicado: (2013)

Assessment of Genetic Differentiation and Linkage Disequilibrium in Solanum pimpinellifolium Using Genome-Wide High-Density SNP Markers
por: Lin, Ya-Ping, et al.
Publicado: (2019)

Genetic diversity and linkage disequilibrium using SNP (KASP) and AFLP markers in a worldwide durum wheat (Triticum turgidum L. var durum) collection
por: Roncallo, Pablo Federico, et al.
Publicado: (2019)

Estimation of linkage disequilibrium levels and allele frequency distribution in crossbred Vrindavani cattle using 50K SNP data
por: Singh, Akansha, et al.
Publicado: (2021)

Estimation of linkage disequilibrium in four US pig breeds
por: Badke, Yvonne M, et al.
Publicado: (2012)

Linkage disequilibrium and inbreeding estimation in Spanish Churra sheep
por: García-Gámez, Elsa, et al.
Publicado: (2012)

Genetic Diversity, Population Structure, and Linkage Disequilibrium of an Association-Mapping Panel Revealed by Genome-Wide SNP Markers in Sesame
por: Cui, Chengqi, et al.
Publicado: (2017)

Search for inherited susceptibility to radiation-associated meningioma by genomewide SNP linkage disequilibrium mapping
por: Hosking, F J, et al.
Publicado: (2011)

The extent of linkage disequilibrium in beef cattle breeds using high-density SNP genotypes
por: Porto-Neto, Laercio R, et al.
Publicado: (2014)

Confounding by linkage disequilibrium
por: Aissani, Brahim
Publicado: (2014)

Constructing a linkage–linkage disequilibrium map using dominant-segregating markers
por: Zhu, Xuli, et al.
Publicado: (2016)

Corrigendum: Genetic Diversity, Population Structure, and Linkage Disequilibrium of an Association-Mapping Panel Revealed by Genome-Wide SNP Markers in Sesame
por: Cui, Chengqi, et al.
Publicado: (2017)

Development of an Alfalfa SNP Array and Its Use to Evaluate Patterns of Population Structure and Linkage Disequilibrium
por: Li, Xuehui, et al.
Publicado: (2014)

Accuracy of haplotype estimation in a region of low linkage disequilibrium
por: Avery, Christy L, et al.
Publicado: (2005)

Estimates of linkage disequilibrium and effective population size in rainbow trout
por: Rexroad, Caird E, et al.
Publicado: (2009)

Estimation of Recombination Rate and Maternal Linkage Disequilibrium in Half-Sibs
por: Hampel, Alexander, et al.
Publicado: (2018)

Comparing heritability estimators under alternative structures of linkage disequilibrium
por: Min, Alan, et al.
Publicado: (2022)

Volume measures for linkage disequilibrium
por: Chen, Yuguo, et al.
Publicado: (2006)

Linkage Disequilibrium in Wild Mice
por: Laurie, Cathy C, et al.
Publicado: (2007)

Cosmopolitan linkage disequilibrium maps
por: Gibson, Jane, et al.
Publicado: (2005)

Assortative Mating and Linkage Disequilibrium
por: Hedrick, Philip W.
Publicado: (2016)

Optimal linkage disequilibrium splitting
por: Privé, Florian
Publicado: (2021)

High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L
por: Delourme, Régine, et al.
Publicado: (2013)

SNPrune: an efficient algorithm to prune large SNP array and sequence datasets based on high linkage disequilibrium
por: Calus, Mario P. L., et al.
Publicado: (2018)

Effects of Overlapping Generations on Linkage Disequilibrium Estimates of Effective Population Size
por: Waples, Robin S., et al.
Publicado: (2014)

Estimation of linkage disequilibrium and analysis of genetic diversity in Korean chicken lines
por: Seo, Dongwon, et al.
Publicado: (2018)

Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data
por: Bilton, Timothy P., et al.
Publicado: (2018)

Estimating linkage disequilibrium from genotypes under Hardy-Weinberg equilibrium
por: Hui, Tin-Yu J., et al.
Publicado: (2020)

Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm
por: Siol, Mathieu, et al.
Publicado: (2017)

Linkage disequilibrium and population structure in a core collection of Brassica napus (L.)
por: Rahman, Mukhlesur, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_9oothg76q8mo0f5shqgbduqseo