NGSView: an extensible open source editor for next-generation sequencing data

Summary:High-throughput sequencing technologies introduce novel demands on tools available for data analysis. We have developed NGSView (Next Generation Sequence View), a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization an...

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Detalles Bibliográficos
Autores principales: Arner, Erik, Hayashizaki, Yoshihide, Daub, Carsten O.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2796816/
https://www.ncbi.nlm.nih.gov/pubmed/19855106
http://dx.doi.org/10.1093/bioinformatics/btp611
Descripción
Sumario:Summary:High-throughput sequencing technologies introduce novel demands on tools available for data analysis. We have developed NGSView (Next Generation Sequence View), a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface. NGSView is available under an open source license and can be extended through a well documented API. Availability: http://ngsview.sourceforge.net Contact: arner@gsc.riken.jp

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