NGSView: an extensible open source editor for next-generation sequencing data

Summary:High-throughput sequencing technologies introduce novel demands on tools available for data analysis. We have developed NGSView (Next Generation Sequence View), a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization an...

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Detalles Bibliográficos
Autores principales: Arner, Erik, Hayashizaki, Yoshihide, Daub, Carsten O.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2796816/
https://www.ncbi.nlm.nih.gov/pubmed/19855106
http://dx.doi.org/10.1093/bioinformatics/btp611
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author Arner, Erik
Hayashizaki, Yoshihide
Daub, Carsten O.
author_facet Arner, Erik
Hayashizaki, Yoshihide
Daub, Carsten O.
author_sort Arner, Erik
collection PubMed
description Summary:High-throughput sequencing technologies introduce novel demands on tools available for data analysis. We have developed NGSView (Next Generation Sequence View), a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface. NGSView is available under an open source license and can be extended through a well documented API. Availability: http://ngsview.sourceforge.net Contact: arner@gsc.riken.jp
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spelling pubmed-27968162009-12-23 NGSView: an extensible open source editor for next-generation sequencing data Arner, Erik Hayashizaki, Yoshihide Daub, Carsten O. Bioinformatics Applications Note Summary:High-throughput sequencing technologies introduce novel demands on tools available for data analysis. We have developed NGSView (Next Generation Sequence View), a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface. NGSView is available under an open source license and can be extended through a well documented API. Availability: http://ngsview.sourceforge.net Contact: arner@gsc.riken.jp Oxford University Press 2010-01-01 2009-10-24 /pmc/articles/PMC2796816/ /pubmed/19855106 http://dx.doi.org/10.1093/bioinformatics/btp611 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Arner, Erik
Hayashizaki, Yoshihide
Daub, Carsten O.
NGSView: an extensible open source editor for next-generation sequencing data
title NGSView: an extensible open source editor for next-generation sequencing data
title_full NGSView: an extensible open source editor for next-generation sequencing data
title_fullStr NGSView: an extensible open source editor for next-generation sequencing data
title_full_unstemmed NGSView: an extensible open source editor for next-generation sequencing data
title_short NGSView: an extensible open source editor for next-generation sequencing data
title_sort ngsview: an extensible open source editor for next-generation sequencing data
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2796816/
https://www.ncbi.nlm.nih.gov/pubmed/19855106
http://dx.doi.org/10.1093/bioinformatics/btp611
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