Cargando…
Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada
BACKGROUND: This study reports progress in assembling a DNA barcode reference library for Ephemeroptera, Plecoptera, and Trichoptera ("EPTs") from a Canadian subarctic site, which is the focus of a comprehensive biodiversity inventory using DNA barcoding. These three groups of aquatic inse...
Autores principales: | , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2009
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800108/ https://www.ncbi.nlm.nih.gov/pubmed/20003245 http://dx.doi.org/10.1186/1742-9994-6-30 |
_version_ | 1782175838819581952 |
---|---|
author | Zhou, Xin Adamowicz, Sarah J Jacobus, Luke M DeWalt, R Edward Hebert, Paul DN |
author_facet | Zhou, Xin Adamowicz, Sarah J Jacobus, Luke M DeWalt, R Edward Hebert, Paul DN |
author_sort | Zhou, Xin |
collection | PubMed |
description | BACKGROUND: This study reports progress in assembling a DNA barcode reference library for Ephemeroptera, Plecoptera, and Trichoptera ("EPTs") from a Canadian subarctic site, which is the focus of a comprehensive biodiversity inventory using DNA barcoding. These three groups of aquatic insects exhibit a moderate level of species diversity, making them ideal for testing the feasibility of DNA barcoding for routine biotic surveys. We explore the correlation between the morphological species delineations, DNA barcode-based haplotype clusters delimited by a sequence threshold (2%), and a threshold-free approach to biodiversity quantification--phylogenetic diversity. RESULTS: A DNA barcode reference library is built for 112 EPT species for the focal region, consisting of 2277 COI sequences. Close correspondence was found between EPT morphospecies and haplotype clusters as designated using a standard threshold value. Similarly, the shapes of taxon accumulation curves based upon haplotype clusters were very similar to those generated using phylogenetic diversity accumulation curves, but were much more computationally efficient. CONCLUSION: The results of this study will facilitate other lines of research on northern EPTs and also bode well for rapidly conducting initial biodiversity assessments in unknown EPT faunas. |
format | Text |
id | pubmed-2800108 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-28001082009-12-31 Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada Zhou, Xin Adamowicz, Sarah J Jacobus, Luke M DeWalt, R Edward Hebert, Paul DN Front Zool Research BACKGROUND: This study reports progress in assembling a DNA barcode reference library for Ephemeroptera, Plecoptera, and Trichoptera ("EPTs") from a Canadian subarctic site, which is the focus of a comprehensive biodiversity inventory using DNA barcoding. These three groups of aquatic insects exhibit a moderate level of species diversity, making them ideal for testing the feasibility of DNA barcoding for routine biotic surveys. We explore the correlation between the morphological species delineations, DNA barcode-based haplotype clusters delimited by a sequence threshold (2%), and a threshold-free approach to biodiversity quantification--phylogenetic diversity. RESULTS: A DNA barcode reference library is built for 112 EPT species for the focal region, consisting of 2277 COI sequences. Close correspondence was found between EPT morphospecies and haplotype clusters as designated using a standard threshold value. Similarly, the shapes of taxon accumulation curves based upon haplotype clusters were very similar to those generated using phylogenetic diversity accumulation curves, but were much more computationally efficient. CONCLUSION: The results of this study will facilitate other lines of research on northern EPTs and also bode well for rapidly conducting initial biodiversity assessments in unknown EPT faunas. BioMed Central 2009-12-10 /pmc/articles/PMC2800108/ /pubmed/20003245 http://dx.doi.org/10.1186/1742-9994-6-30 Text en Copyright ©2009 Zhou et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Zhou, Xin Adamowicz, Sarah J Jacobus, Luke M DeWalt, R Edward Hebert, Paul DN Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada |
title | Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada |
title_full | Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada |
title_fullStr | Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada |
title_full_unstemmed | Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada |
title_short | Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada |
title_sort | towards a comprehensive barcode library for arctic life - ephemeroptera, plecoptera, and trichoptera of churchill, manitoba, canada |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2800108/ https://www.ncbi.nlm.nih.gov/pubmed/20003245 http://dx.doi.org/10.1186/1742-9994-6-30 |
work_keys_str_mv | AT zhouxin towardsacomprehensivebarcodelibraryforarcticlifeephemeropteraplecopteraandtrichopteraofchurchillmanitobacanada AT adamowiczsarahj towardsacomprehensivebarcodelibraryforarcticlifeephemeropteraplecopteraandtrichopteraofchurchillmanitobacanada AT jacobuslukem towardsacomprehensivebarcodelibraryforarcticlifeephemeropteraplecopteraandtrichopteraofchurchillmanitobacanada AT dewaltredward towardsacomprehensivebarcodelibraryforarcticlifeephemeropteraplecopteraandtrichopteraofchurchillmanitobacanada AT hebertpauldn towardsacomprehensivebarcodelibraryforarcticlifeephemeropteraplecopteraandtrichopteraofchurchillmanitobacanada |