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Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images

This paper describes an algorithm for extracting pulmonary vascular trees (arteries plus veins) from three-dimensional (3D) thoracic computed tomographic (CT) images. The algorithm integrates tube enhancement filter and traversal approaches which are based on eigenvalues and eigenvectors of a Hessia...

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Detalles Bibliográficos
Autores principales: Shikata, Hidenori, McLennan, Geoffrey, Hoffman, Eric A., Sonka, Milan
Formato: Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2801012/
https://www.ncbi.nlm.nih.gov/pubmed/20052391
http://dx.doi.org/10.1155/2009/636240
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author Shikata, Hidenori
McLennan, Geoffrey
Hoffman, Eric A.
Sonka, Milan
author_facet Shikata, Hidenori
McLennan, Geoffrey
Hoffman, Eric A.
Sonka, Milan
author_sort Shikata, Hidenori
collection PubMed
description This paper describes an algorithm for extracting pulmonary vascular trees (arteries plus veins) from three-dimensional (3D) thoracic computed tomographic (CT) images. The algorithm integrates tube enhancement filter and traversal approaches which are based on eigenvalues and eigenvectors of a Hessian matrix to extract thin peripheral segments as well as thick vessels close to the lung hilum. The resultant algorithm was applied to a simulation data set and 44 scans from 22 human subjects imaged via multidetector-row CT (MDCT) during breath holds at 85% and 20% of their vital capacity. A quantitative validation was performed with more than 1000 manually identified points selected from inside the vessel segments to assess true positives (TPs) and 1000 points randomly placed outside of the vessels to evaluate false positives (FPs) in each case. On average, for both the high and low volume lung images, 99% of the points was properly marked as vessel and 1% of the points were assessed as FPs. Our hybrid segmentation algorithm provides a highly reliable method of segmenting the combined pulmonary venous and arterial trees which in turn will serve as a critical starting point for further quantitative analysis tasks and aid in our overall goal of establishing a normative atlas of the human lung.
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spelling pubmed-28010122010-01-05 Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images Shikata, Hidenori McLennan, Geoffrey Hoffman, Eric A. Sonka, Milan Int J Biomed Imaging Research Article This paper describes an algorithm for extracting pulmonary vascular trees (arteries plus veins) from three-dimensional (3D) thoracic computed tomographic (CT) images. The algorithm integrates tube enhancement filter and traversal approaches which are based on eigenvalues and eigenvectors of a Hessian matrix to extract thin peripheral segments as well as thick vessels close to the lung hilum. The resultant algorithm was applied to a simulation data set and 44 scans from 22 human subjects imaged via multidetector-row CT (MDCT) during breath holds at 85% and 20% of their vital capacity. A quantitative validation was performed with more than 1000 manually identified points selected from inside the vessel segments to assess true positives (TPs) and 1000 points randomly placed outside of the vessels to evaluate false positives (FPs) in each case. On average, for both the high and low volume lung images, 99% of the points was properly marked as vessel and 1% of the points were assessed as FPs. Our hybrid segmentation algorithm provides a highly reliable method of segmenting the combined pulmonary venous and arterial trees which in turn will serve as a critical starting point for further quantitative analysis tasks and aid in our overall goal of establishing a normative atlas of the human lung. Hindawi Publishing Corporation 2009 2009-12-14 /pmc/articles/PMC2801012/ /pubmed/20052391 http://dx.doi.org/10.1155/2009/636240 Text en Copyright © 2009 Hidenori Shikata et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Shikata, Hidenori
McLennan, Geoffrey
Hoffman, Eric A.
Sonka, Milan
Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images
title Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images
title_full Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images
title_fullStr Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images
title_full_unstemmed Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images
title_short Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images
title_sort segmentation of pulmonary vascular trees from thoracic 3d ct images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2801012/
https://www.ncbi.nlm.nih.gov/pubmed/20052391
http://dx.doi.org/10.1155/2009/636240
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