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An association study of SERPING1 gene and age-related macular degeneration in a Han Chinese population

PURPOSE: Single nucleotide polymorphisms (SNPs) in the complement component 1 inhibitor (SERPING1) gene have been shown to be significantly associated with age-related macular degeneration (AMD) in Caucasian populations. A replication study of an association between these SNPs and AMD in a Chinese p...

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Autores principales: Lu, Fang, Zhao, Peiquan, Fan, Yinchuan, Tang, Shibo, Hu, Jianbin, Liu, Xiaoqi, Yang, Xian, Chen, Yiye, Li, Tao, Lei, Chuntao, Yang, Jiyun, Lin, Ying, Ma, Shi, Li, Chunyong, Shi, Yi, Yang, Zhenglin
Formato: Texto
Lenguaje:English
Publicado: Molecular Vision 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803124/
https://www.ncbi.nlm.nih.gov/pubmed/20062564
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author Lu, Fang
Zhao, Peiquan
Fan, Yinchuan
Tang, Shibo
Hu, Jianbin
Liu, Xiaoqi
Yang, Xian
Chen, Yiye
Li, Tao
Lei, Chuntao
Yang, Jiyun
Lin, Ying
Ma, Shi
Li, Chunyong
Shi, Yi
Yang, Zhenglin
author_facet Lu, Fang
Zhao, Peiquan
Fan, Yinchuan
Tang, Shibo
Hu, Jianbin
Liu, Xiaoqi
Yang, Xian
Chen, Yiye
Li, Tao
Lei, Chuntao
Yang, Jiyun
Lin, Ying
Ma, Shi
Li, Chunyong
Shi, Yi
Yang, Zhenglin
author_sort Lu, Fang
collection PubMed
description PURPOSE: Single nucleotide polymorphisms (SNPs) in the complement component 1 inhibitor (SERPING1) gene have been shown to be significantly associated with age-related macular degeneration (AMD) in Caucasian populations. A replication study of an association between these SNPs and AMD in a Chinese population is reported in this study. METHODS: Six SNPs, including rs2511990, rs1005510, rs11546660, rs2511989, rs2511988, and rs4926 in SERPING1 were genotyped in a Han Chinese subject group using the SNaPshot method of ABI. This subject group was composed of 194 patients with choroidal neovascularization (CNV or wet) AMD, 78 patients with soft drusen, and 285 matched controls. P values of the SNPs were calculated using an additive model. Haplotype frequencies between cases and controls were compared by χ2 analysis. The haplotype analysis was performed using Haploview 4.0. RESULTS: None of the six SNPs showed significant association with AMD. None of the major haplotypes were observed to be significantly associated with AMD or choroidal neovascularization AMD (CNV) after a stringent Bonferroni correction. CONCLUSIONS: We demonstrate that SNPs in SERPING1 are not significantly associated with AMD in the mainland Han Chinese population.
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spelling pubmed-28031242010-01-08 An association study of SERPING1 gene and age-related macular degeneration in a Han Chinese population Lu, Fang Zhao, Peiquan Fan, Yinchuan Tang, Shibo Hu, Jianbin Liu, Xiaoqi Yang, Xian Chen, Yiye Li, Tao Lei, Chuntao Yang, Jiyun Lin, Ying Ma, Shi Li, Chunyong Shi, Yi Yang, Zhenglin Mol Vis Research Article PURPOSE: Single nucleotide polymorphisms (SNPs) in the complement component 1 inhibitor (SERPING1) gene have been shown to be significantly associated with age-related macular degeneration (AMD) in Caucasian populations. A replication study of an association between these SNPs and AMD in a Chinese population is reported in this study. METHODS: Six SNPs, including rs2511990, rs1005510, rs11546660, rs2511989, rs2511988, and rs4926 in SERPING1 were genotyped in a Han Chinese subject group using the SNaPshot method of ABI. This subject group was composed of 194 patients with choroidal neovascularization (CNV or wet) AMD, 78 patients with soft drusen, and 285 matched controls. P values of the SNPs were calculated using an additive model. Haplotype frequencies between cases and controls were compared by χ2 analysis. The haplotype analysis was performed using Haploview 4.0. RESULTS: None of the six SNPs showed significant association with AMD. None of the major haplotypes were observed to be significantly associated with AMD or choroidal neovascularization AMD (CNV) after a stringent Bonferroni correction. CONCLUSIONS: We demonstrate that SNPs in SERPING1 are not significantly associated with AMD in the mainland Han Chinese population. Molecular Vision 2010-01-10 /pmc/articles/PMC2803124/ /pubmed/20062564 Text en Copyright © 2010 Molecular Vision. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Lu, Fang
Zhao, Peiquan
Fan, Yinchuan
Tang, Shibo
Hu, Jianbin
Liu, Xiaoqi
Yang, Xian
Chen, Yiye
Li, Tao
Lei, Chuntao
Yang, Jiyun
Lin, Ying
Ma, Shi
Li, Chunyong
Shi, Yi
Yang, Zhenglin
An association study of SERPING1 gene and age-related macular degeneration in a Han Chinese population
title An association study of SERPING1 gene and age-related macular degeneration in a Han Chinese population
title_full An association study of SERPING1 gene and age-related macular degeneration in a Han Chinese population
title_fullStr An association study of SERPING1 gene and age-related macular degeneration in a Han Chinese population
title_full_unstemmed An association study of SERPING1 gene and age-related macular degeneration in a Han Chinese population
title_short An association study of SERPING1 gene and age-related macular degeneration in a Han Chinese population
title_sort association study of serping1 gene and age-related macular degeneration in a han chinese population
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803124/
https://www.ncbi.nlm.nih.gov/pubmed/20062564
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