Cargando…
New tools at the Candida Genome Database: biochemical pathways and full-text literature search
The Candida Genome Database (CGD, http://www.candidagenome.org/) provides online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. Herein, we describe two recently added features, Candida Biochemical Pathways...
Autores principales: | , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2010
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808937/ https://www.ncbi.nlm.nih.gov/pubmed/19808938 http://dx.doi.org/10.1093/nar/gkp836 |
_version_ | 1782176557887913984 |
---|---|
author | Skrzypek, Marek S. Arnaud, Martha B. Costanzo, Maria C. Inglis, Diane O. Shah, Prachi Binkley, Gail Miyasato, Stuart R. Sherlock, Gavin |
author_facet | Skrzypek, Marek S. Arnaud, Martha B. Costanzo, Maria C. Inglis, Diane O. Shah, Prachi Binkley, Gail Miyasato, Stuart R. Sherlock, Gavin |
author_sort | Skrzypek, Marek S. |
collection | PubMed |
description | The Candida Genome Database (CGD, http://www.candidagenome.org/) provides online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. Herein, we describe two recently added features, Candida Biochemical Pathways and the Textpresso full-text literature search tool. The Biochemical Pathways tool provides visualization of metabolic pathways and analysis tools that facilitate interpretation of experimental data, including results of large-scale experiments, in the context of Candida metabolism. Textpresso for Candida allows searching through the full-text of Candida-specific literature, including clinical and epidemiological studies. |
format | Text |
id | pubmed-2808937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-28089372010-01-20 New tools at the Candida Genome Database: biochemical pathways and full-text literature search Skrzypek, Marek S. Arnaud, Martha B. Costanzo, Maria C. Inglis, Diane O. Shah, Prachi Binkley, Gail Miyasato, Stuart R. Sherlock, Gavin Nucleic Acids Res Articles The Candida Genome Database (CGD, http://www.candidagenome.org/) provides online access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. Herein, we describe two recently added features, Candida Biochemical Pathways and the Textpresso full-text literature search tool. The Biochemical Pathways tool provides visualization of metabolic pathways and analysis tools that facilitate interpretation of experimental data, including results of large-scale experiments, in the context of Candida metabolism. Textpresso for Candida allows searching through the full-text of Candida-specific literature, including clinical and epidemiological studies. Oxford University Press 2010-01 2009-10-06 /pmc/articles/PMC2808937/ /pubmed/19808938 http://dx.doi.org/10.1093/nar/gkp836 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Skrzypek, Marek S. Arnaud, Martha B. Costanzo, Maria C. Inglis, Diane O. Shah, Prachi Binkley, Gail Miyasato, Stuart R. Sherlock, Gavin New tools at the Candida Genome Database: biochemical pathways and full-text literature search |
title | New tools at the Candida Genome Database: biochemical pathways and full-text literature search |
title_full | New tools at the Candida Genome Database: biochemical pathways and full-text literature search |
title_fullStr | New tools at the Candida Genome Database: biochemical pathways and full-text literature search |
title_full_unstemmed | New tools at the Candida Genome Database: biochemical pathways and full-text literature search |
title_short | New tools at the Candida Genome Database: biochemical pathways and full-text literature search |
title_sort | new tools at the candida genome database: biochemical pathways and full-text literature search |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808937/ https://www.ncbi.nlm.nih.gov/pubmed/19808938 http://dx.doi.org/10.1093/nar/gkp836 |
work_keys_str_mv | AT skrzypekmareks newtoolsatthecandidagenomedatabasebiochemicalpathwaysandfulltextliteraturesearch AT arnaudmarthab newtoolsatthecandidagenomedatabasebiochemicalpathwaysandfulltextliteraturesearch AT costanzomariac newtoolsatthecandidagenomedatabasebiochemicalpathwaysandfulltextliteraturesearch AT inglisdianeo newtoolsatthecandidagenomedatabasebiochemicalpathwaysandfulltextliteraturesearch AT shahprachi newtoolsatthecandidagenomedatabasebiochemicalpathwaysandfulltextliteraturesearch AT binkleygail newtoolsatthecandidagenomedatabasebiochemicalpathwaysandfulltextliteraturesearch AT miyasatostuartr newtoolsatthecandidagenomedatabasebiochemicalpathwaysandfulltextliteraturesearch AT sherlockgavin newtoolsatthecandidagenomedatabasebiochemicalpathwaysandfulltextliteraturesearch |