Cargando…
DRYGIN: a database of quantitative genetic interaction networks in yeast
Genetic interactions are highly informative for deciphering the underlying functional principles that govern how genes control cell processes. Recent developments in Synthetic Genetic Array (SGA) analysis enable the mapping of quantitative genetic interactions on a genome-wide scale. To facilitate a...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2010
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808960/ https://www.ncbi.nlm.nih.gov/pubmed/19880385 http://dx.doi.org/10.1093/nar/gkp820 |
_version_ | 1782176563442221056 |
---|---|
author | Koh, Judice L. Y. Ding, Huiming Costanzo, Michael Baryshnikova, Anastasia Toufighi, Kiana Bader, Gary D. Myers, Chad L. Andrews, Brenda J. Boone, Charles |
author_facet | Koh, Judice L. Y. Ding, Huiming Costanzo, Michael Baryshnikova, Anastasia Toufighi, Kiana Bader, Gary D. Myers, Chad L. Andrews, Brenda J. Boone, Charles |
author_sort | Koh, Judice L. Y. |
collection | PubMed |
description | Genetic interactions are highly informative for deciphering the underlying functional principles that govern how genes control cell processes. Recent developments in Synthetic Genetic Array (SGA) analysis enable the mapping of quantitative genetic interactions on a genome-wide scale. To facilitate access to this resource, which will ultimately represent a complete genetic interaction network for a eukaryotic cell, we developed DRYGIN (Data Repository of Yeast Genetic Interactions)—a web database system that aims at providing a central platform for yeast genetic network analysis and visualization. In addition to providing an interface for searching the SGA genetic interactions, DRYGIN also integrates other data sources, in order to associate the genetic interactions with pathway information, protein complexes, other binary genetic and physical interactions, and Gene Ontology functional annotation. DRYGIN version 1.0 currently holds more than 5.4 million measurements of genetic interacting pairs involving ∼4500 genes, and is available at http://drygin.ccbr.utoronto.ca |
format | Text |
id | pubmed-2808960 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-28089602010-01-20 DRYGIN: a database of quantitative genetic interaction networks in yeast Koh, Judice L. Y. Ding, Huiming Costanzo, Michael Baryshnikova, Anastasia Toufighi, Kiana Bader, Gary D. Myers, Chad L. Andrews, Brenda J. Boone, Charles Nucleic Acids Res Articles Genetic interactions are highly informative for deciphering the underlying functional principles that govern how genes control cell processes. Recent developments in Synthetic Genetic Array (SGA) analysis enable the mapping of quantitative genetic interactions on a genome-wide scale. To facilitate access to this resource, which will ultimately represent a complete genetic interaction network for a eukaryotic cell, we developed DRYGIN (Data Repository of Yeast Genetic Interactions)—a web database system that aims at providing a central platform for yeast genetic network analysis and visualization. In addition to providing an interface for searching the SGA genetic interactions, DRYGIN also integrates other data sources, in order to associate the genetic interactions with pathway information, protein complexes, other binary genetic and physical interactions, and Gene Ontology functional annotation. DRYGIN version 1.0 currently holds more than 5.4 million measurements of genetic interacting pairs involving ∼4500 genes, and is available at http://drygin.ccbr.utoronto.ca Oxford University Press 2010-01 2009-10-30 /pmc/articles/PMC2808960/ /pubmed/19880385 http://dx.doi.org/10.1093/nar/gkp820 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Koh, Judice L. Y. Ding, Huiming Costanzo, Michael Baryshnikova, Anastasia Toufighi, Kiana Bader, Gary D. Myers, Chad L. Andrews, Brenda J. Boone, Charles DRYGIN: a database of quantitative genetic interaction networks in yeast |
title | DRYGIN: a database of quantitative genetic interaction networks in yeast |
title_full | DRYGIN: a database of quantitative genetic interaction networks in yeast |
title_fullStr | DRYGIN: a database of quantitative genetic interaction networks in yeast |
title_full_unstemmed | DRYGIN: a database of quantitative genetic interaction networks in yeast |
title_short | DRYGIN: a database of quantitative genetic interaction networks in yeast |
title_sort | drygin: a database of quantitative genetic interaction networks in yeast |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808960/ https://www.ncbi.nlm.nih.gov/pubmed/19880385 http://dx.doi.org/10.1093/nar/gkp820 |
work_keys_str_mv | AT kohjudicely dryginadatabaseofquantitativegeneticinteractionnetworksinyeast AT dinghuiming dryginadatabaseofquantitativegeneticinteractionnetworksinyeast AT costanzomichael dryginadatabaseofquantitativegeneticinteractionnetworksinyeast AT baryshnikovaanastasia dryginadatabaseofquantitativegeneticinteractionnetworksinyeast AT toufighikiana dryginadatabaseofquantitativegeneticinteractionnetworksinyeast AT badergaryd dryginadatabaseofquantitativegeneticinteractionnetworksinyeast AT myerschadl dryginadatabaseofquantitativegeneticinteractionnetworksinyeast AT andrewsbrendaj dryginadatabaseofquantitativegeneticinteractionnetworksinyeast AT boonecharles dryginadatabaseofquantitativegeneticinteractionnetworksinyeast |