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DRYGIN: a database of quantitative genetic interaction networks in yeast

Genetic interactions are highly informative for deciphering the underlying functional principles that govern how genes control cell processes. Recent developments in Synthetic Genetic Array (SGA) analysis enable the mapping of quantitative genetic interactions on a genome-wide scale. To facilitate a...

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Autores principales: Koh, Judice L. Y., Ding, Huiming, Costanzo, Michael, Baryshnikova, Anastasia, Toufighi, Kiana, Bader, Gary D., Myers, Chad L., Andrews, Brenda J., Boone, Charles
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808960/
https://www.ncbi.nlm.nih.gov/pubmed/19880385
http://dx.doi.org/10.1093/nar/gkp820
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author Koh, Judice L. Y.
Ding, Huiming
Costanzo, Michael
Baryshnikova, Anastasia
Toufighi, Kiana
Bader, Gary D.
Myers, Chad L.
Andrews, Brenda J.
Boone, Charles
author_facet Koh, Judice L. Y.
Ding, Huiming
Costanzo, Michael
Baryshnikova, Anastasia
Toufighi, Kiana
Bader, Gary D.
Myers, Chad L.
Andrews, Brenda J.
Boone, Charles
author_sort Koh, Judice L. Y.
collection PubMed
description Genetic interactions are highly informative for deciphering the underlying functional principles that govern how genes control cell processes. Recent developments in Synthetic Genetic Array (SGA) analysis enable the mapping of quantitative genetic interactions on a genome-wide scale. To facilitate access to this resource, which will ultimately represent a complete genetic interaction network for a eukaryotic cell, we developed DRYGIN (Data Repository of Yeast Genetic Interactions)—a web database system that aims at providing a central platform for yeast genetic network analysis and visualization. In addition to providing an interface for searching the SGA genetic interactions, DRYGIN also integrates other data sources, in order to associate the genetic interactions with pathway information, protein complexes, other binary genetic and physical interactions, and Gene Ontology functional annotation. DRYGIN version 1.0 currently holds more than 5.4 million measurements of genetic interacting pairs involving ∼4500 genes, and is available at http://drygin.ccbr.utoronto.ca
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spelling pubmed-28089602010-01-20 DRYGIN: a database of quantitative genetic interaction networks in yeast Koh, Judice L. Y. Ding, Huiming Costanzo, Michael Baryshnikova, Anastasia Toufighi, Kiana Bader, Gary D. Myers, Chad L. Andrews, Brenda J. Boone, Charles Nucleic Acids Res Articles Genetic interactions are highly informative for deciphering the underlying functional principles that govern how genes control cell processes. Recent developments in Synthetic Genetic Array (SGA) analysis enable the mapping of quantitative genetic interactions on a genome-wide scale. To facilitate access to this resource, which will ultimately represent a complete genetic interaction network for a eukaryotic cell, we developed DRYGIN (Data Repository of Yeast Genetic Interactions)—a web database system that aims at providing a central platform for yeast genetic network analysis and visualization. In addition to providing an interface for searching the SGA genetic interactions, DRYGIN also integrates other data sources, in order to associate the genetic interactions with pathway information, protein complexes, other binary genetic and physical interactions, and Gene Ontology functional annotation. DRYGIN version 1.0 currently holds more than 5.4 million measurements of genetic interacting pairs involving ∼4500 genes, and is available at http://drygin.ccbr.utoronto.ca Oxford University Press 2010-01 2009-10-30 /pmc/articles/PMC2808960/ /pubmed/19880385 http://dx.doi.org/10.1093/nar/gkp820 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Koh, Judice L. Y.
Ding, Huiming
Costanzo, Michael
Baryshnikova, Anastasia
Toufighi, Kiana
Bader, Gary D.
Myers, Chad L.
Andrews, Brenda J.
Boone, Charles
DRYGIN: a database of quantitative genetic interaction networks in yeast
title DRYGIN: a database of quantitative genetic interaction networks in yeast
title_full DRYGIN: a database of quantitative genetic interaction networks in yeast
title_fullStr DRYGIN: a database of quantitative genetic interaction networks in yeast
title_full_unstemmed DRYGIN: a database of quantitative genetic interaction networks in yeast
title_short DRYGIN: a database of quantitative genetic interaction networks in yeast
title_sort drygin: a database of quantitative genetic interaction networks in yeast
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808960/
https://www.ncbi.nlm.nih.gov/pubmed/19880385
http://dx.doi.org/10.1093/nar/gkp820
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