The University of Minnesota Biocatalysis/Biodegradation Database: improving public access

The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD, http://umbbd.msi.umn.edu/) began in 1995 and now contains information on almost 1200 compounds, over 800 enzymes, almost 1300 reactions and almost 500 microorganism entries. Besides these data, it includes a Biochemical Period...

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Detalles Bibliográficos
Autores principales: Gao, Junfeng, Ellis, Lynda B. M., Wackett, Lawrence P.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808978/
https://www.ncbi.nlm.nih.gov/pubmed/19767608
http://dx.doi.org/10.1093/nar/gkp771
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author Gao, Junfeng
Ellis, Lynda B. M.
Wackett, Lawrence P.
author_facet Gao, Junfeng
Ellis, Lynda B. M.
Wackett, Lawrence P.
author_sort Gao, Junfeng
collection PubMed
description The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD, http://umbbd.msi.umn.edu/) began in 1995 and now contains information on almost 1200 compounds, over 800 enzymes, almost 1300 reactions and almost 500 microorganism entries. Besides these data, it includes a Biochemical Periodic Table (UM-BPT) and a rule-based Pathway Prediction System (UM-PPS) (http://umbbd.msi.umn.edu/predict/) that predicts plausible pathways for microbial degradation of organic compounds. Currently, the UM-PPS contains 260 biotransformation rules derived from reactions found in the UM-BBD and scientific literature. Public access to UM-BBD data is increasing. UM-BBD compound data are now contributed to PubChem and ChemSpider, the public chemical databases. A new mirror website of the UM-BBD, UM-BPT and UM-PPS is being developed at ETH Zürich to improve speed and reliability of online access from anywhere in the world.
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spelling pubmed-28089782010-01-20 The University of Minnesota Biocatalysis/Biodegradation Database: improving public access Gao, Junfeng Ellis, Lynda B. M. Wackett, Lawrence P. Nucleic Acids Res Articles The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD, http://umbbd.msi.umn.edu/) began in 1995 and now contains information on almost 1200 compounds, over 800 enzymes, almost 1300 reactions and almost 500 microorganism entries. Besides these data, it includes a Biochemical Periodic Table (UM-BPT) and a rule-based Pathway Prediction System (UM-PPS) (http://umbbd.msi.umn.edu/predict/) that predicts plausible pathways for microbial degradation of organic compounds. Currently, the UM-PPS contains 260 biotransformation rules derived from reactions found in the UM-BBD and scientific literature. Public access to UM-BBD data is increasing. UM-BBD compound data are now contributed to PubChem and ChemSpider, the public chemical databases. A new mirror website of the UM-BBD, UM-BPT and UM-PPS is being developed at ETH Zürich to improve speed and reliability of online access from anywhere in the world. Oxford University Press 2010-01 2009-09-18 /pmc/articles/PMC2808978/ /pubmed/19767608 http://dx.doi.org/10.1093/nar/gkp771 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Gao, Junfeng
Ellis, Lynda B. M.
Wackett, Lawrence P.
The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
title The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
title_full The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
title_fullStr The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
title_full_unstemmed The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
title_short The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
title_sort university of minnesota biocatalysis/biodegradation database: improving public access
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808978/
https://www.ncbi.nlm.nih.gov/pubmed/19767608
http://dx.doi.org/10.1093/nar/gkp771
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