Tablet—next generation sequence assembly visualization

Summary: Tablet is a lightweight, high-performance graphical viewer for next-generation sequence assemblies and alignments. Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any...

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Detalles Bibliográficos
Autores principales: Milne, Iain, Bayer, Micha, Cardle, Linda, Shaw, Paul, Stephen, Gordon, Wright, Frank, Marshall, David
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2010
Materias:
Application Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815658/
https://www.ncbi.nlm.nih.gov/pubmed/19965881
http://dx.doi.org/10.1093/bioinformatics/btp666
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author Milne, Iain
Bayer, Micha
Cardle, Linda
Shaw, Paul
Stephen, Gordon
Wright, Frank
Marshall, David
author_facet Milne, Iain
Bayer, Micha
Cardle, Linda
Shaw, Paul
Stephen, Gordon
Wright, Frank
Marshall, David
author_sort Milne, Iain
collection PubMed
description Summary: Tablet is a lightweight, high-performance graphical viewer for next-generation sequence assemblies and alignments. Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any region of interest, and whole contig overviews and data summaries. Tablet is both multi-core aware and memory efficient, allowing it to handle assemblies containing millions of reads, even on a 32-bit desktop machine. Availability: Tablet is freely available for Microsoft Windows, Apple Mac OS X, Linux and Solaris. Fully bundled installers can be downloaded from http://bioinf.scri.ac.uk/tablet in 32- and 64-bit versions. Contact: tablet@scri.ac.uk
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spelling pubmed-28156582010-02-03 Tablet—next generation sequence assembly visualization Milne, Iain Bayer, Micha Cardle, Linda Shaw, Paul Stephen, Gordon Wright, Frank Marshall, David Bioinformatics Application Notes Summary: Tablet is a lightweight, high-performance graphical viewer for next-generation sequence assemblies and alignments. Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any region of interest, and whole contig overviews and data summaries. Tablet is both multi-core aware and memory efficient, allowing it to handle assemblies containing millions of reads, even on a 32-bit desktop machine. Availability: Tablet is freely available for Microsoft Windows, Apple Mac OS X, Linux and Solaris. Fully bundled installers can be downloaded from http://bioinf.scri.ac.uk/tablet in 32- and 64-bit versions. Contact: tablet@scri.ac.uk Oxford University Press 2010-02-01 2009-12-04 /pmc/articles/PMC2815658/ /pubmed/19965881 http://dx.doi.org/10.1093/bioinformatics/btp666 Text en © The Author(s) 2009. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Notes
Milne, Iain
Bayer, Micha
Cardle, Linda
Shaw, Paul
Stephen, Gordon
Wright, Frank
Marshall, David
Tablet—next generation sequence assembly visualization
title Tablet—next generation sequence assembly visualization
title_full Tablet—next generation sequence assembly visualization
title_fullStr Tablet—next generation sequence assembly visualization
title_full_unstemmed Tablet—next generation sequence assembly visualization
title_short Tablet—next generation sequence assembly visualization
title_sort tablet—next generation sequence assembly visualization
topic Application Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815658/
https://www.ncbi.nlm.nih.gov/pubmed/19965881
http://dx.doi.org/10.1093/bioinformatics/btp666
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AT wrightfrank tabletnextgenerationsequenceassemblyvisualization
AT marshalldavid tabletnextgenerationsequenceassemblyvisualization

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