Cargando…

Tablet—next generation sequence assembly visualization

Summary: Tablet is a lightweight, high-performance graphical viewer for next-generation sequence assemblies and alignments. Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any...

Descripción completa

Detalles Bibliográficos
Autores principales:	Milne, Iain, Bayer, Micha, Cardle, Linda, Shaw, Paul, Stephen, Gordon, Wright, Frank, Marshall, David
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2010
Materias:	Application Notes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815658/ https://www.ncbi.nlm.nih.gov/pubmed/19965881 http://dx.doi.org/10.1093/bioinformatics/btp666

Ejemplares similares

Comparative visualization of genetic and physical maps with Strudel
por: Bayer, Micha, et al.
Publicado: (2011)

Flapjack—graphical genotype visualization
por: Milne, Iain, et al.
Publicado: (2010)

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
por: Milne, Iain, et al.
Publicado: (2009)

NGSNGS: next-generation simulator for next-generation sequencing data
por: Henriksen, Rasmus Amund, et al.
Publicado: (2023)

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets
por: Stocks, Matthew B., et al.
Publicado: (2012)

SAMStat: monitoring biases in next generation sequencing data
por: Lassmann, Timo, et al.
Publicado: (2011)

ggCyto: next generation open-source visualization software for cytometry
por: Van, Phu, et al.
Publicado: (2018)

CD-HIT: accelerated for clustering the next-generation sequencing data
por: Fu, Limin, et al.
Publicado: (2012)

SAMStat 2: quality control for next generation sequencing data
por: Lassmann, Timo
Publicado: (2023)

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud
por: Niemenmaa, Matti, et al.
Publicado: (2012)

NGSView: an extensible open source editor for next-generation sequencing data
por: Arner, Erik, et al.
Publicado: (2010)

BIGpre: A Quality Assessment Package for Next-Generation Sequencing Data
por: Zhang, Tongwu, et al.
Publicado: (2011)

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing
por: Mohiyuddin, Marghoob, et al.
Publicado: (2015)

girafe – an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads
por: Toedling, Joern, et al.
Publicado: (2010)

TagDust—a program to eliminate artifacts from next generation sequencing data
por: Lassmann, Timo, et al.
Publicado: (2009)

Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data
por: Dunn, Tamsen, et al.
Publicado: (2019)

Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data
por: Wang, Bin, et al.
Publicado: (2015)

VikNGS: a C++ variant integration kit for next generation sequencing association analysis
por: Baskurt, Zeynep, et al.
Publicado: (2020)

Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME
por: Lindenbaum, Pierre, et al.
Publicado: (2011)

NgsRelate: a software tool for estimating pairwise relatedness from next-generation sequencing data
por: Korneliussen, Thorfinn Sand, et al.
Publicado: (2015)

OpenContami: a web-based application for detecting microbial contaminants in next-generation sequencing data
por: Park, Sung-Joon, et al.
Publicado: (2021)

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
por: Boeva, Valentina, et al.
Publicado: (2012)

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data
por: Zhao, Yongan, et al.
Publicado: (2012)

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data
por: Preston, Mark D., et al.
Publicado: (2012)

DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data
por: Marriott, Heather, et al.
Publicado: (2023)

BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data
por: Narasimhan, Vagheesh, et al.
Publicado: (2016)

inGAP: an integrated next-generation genome analysis pipeline
por: Qi, Ji, et al.
Publicado: (2010)

Bandage: interactive visualization of de novo genome assemblies
por: Wick, Ryan R., et al.
Publicado: (2015)

Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics
por: Shuey, Megan M, et al.
Publicado: (2023)

ABACAS: algorithm-based automatic contiguation of assembled sequences
por: Assefa, Samuel, et al.
Publicado: (2009)

Assembling millions of short DNA sequences using SSAKE
por: Warren, René L., et al.
Publicado: (2007)

Comprehensive visualization of cell–cell interactions in single-cell and spatial transcriptomics with NICHES
por: Raredon, Micha Sam Brickman, et al.
Publicado: (2022)

IBS: an illustrator for the presentation and visualization of biological sequences
por: Liu, Wenzhong, et al.
Publicado: (2015)

ProtVista: visualization of protein sequence annotations
por: Watkins, Xavier, et al.
Publicado: (2017)

MakeHub: Fully Automated Generation of UCSC Genome Browser Assembly Hubs
por: Hoff, Katharina Jasmin
Publicado: (2019)

Mercator: a pipeline for multi-method, unsupervised visualization and distance generation
por: Abrams, Zachary B., et al.
Publicado: (2021)

SVA: software for annotating and visualizing sequenced human genomes
por: Ge, Dongliang, et al.
Publicado: (2011)

Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs
por: Formenti, Giulio, et al.
Publicado: (2022)

iMotifs: an integrated sequence motif visualization and analysis environment
por: Piipari, Matias, et al.
Publicado: (2010)

MSAViewer: interactive JavaScript visualization of multiple sequence alignments
por: Yachdav, Guy, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_bv0vppvtt8ck0aacq2u48rhneu