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Duplex Structure of a Minimal Nucleic Acid

[Image: see text] The crystal structure of an 8-mer (S)-GNA duplex is presented. As a tool for phasing, the anomalous diffraction of two copper(II) ions within two artificial metallo-base pairs was employed. The duplex structure confirms a canonical Watson−Crick base pairing scheme of GNA with antip...

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Autores principales: Schlegel, Mark K., Essen, Lars-Oliver, Meggers, Eric
Formato: Texto
Lenguaje:English
Publicado: American Chemical Society 2008
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2816004/
https://www.ncbi.nlm.nih.gov/pubmed/18529005
http://dx.doi.org/10.1021/ja802788g
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author Schlegel, Mark K.
Essen, Lars-Oliver
Meggers, Eric
author_facet Schlegel, Mark K.
Essen, Lars-Oliver
Meggers, Eric
author_sort Schlegel, Mark K.
collection PubMed
description [Image: see text] The crystal structure of an 8-mer (S)-GNA duplex is presented. As a tool for phasing, the anomalous diffraction of two copper(II) ions within two artificial metallo-base pairs was employed. The duplex structure confirms a canonical Watson−Crick base pairing scheme of GNA with antiparallel strands. The duplex secondary structure is distinct from canonical A- and B-form nucleic acids and can be described as a right-handed helical ribbon wrapped around the helix axis, resulting in a large hollow core. Most intriguingly, neighboring base pairs slide strongly against each other, resulting in extensive interstrand base−base hydrophobic interactions along with unusual hydrophobic intrastrand interactions of nucleobases with their backbone. These results reveal how a minimal nucleic acid backbone can support highly stable Watson−Crick-like duplex formation.
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spelling pubmed-28160042010-02-03 Duplex Structure of a Minimal Nucleic Acid Schlegel, Mark K. Essen, Lars-Oliver Meggers, Eric J Am Chem Soc [Image: see text] The crystal structure of an 8-mer (S)-GNA duplex is presented. As a tool for phasing, the anomalous diffraction of two copper(II) ions within two artificial metallo-base pairs was employed. The duplex structure confirms a canonical Watson−Crick base pairing scheme of GNA with antiparallel strands. The duplex secondary structure is distinct from canonical A- and B-form nucleic acids and can be described as a right-handed helical ribbon wrapped around the helix axis, resulting in a large hollow core. Most intriguingly, neighboring base pairs slide strongly against each other, resulting in extensive interstrand base−base hydrophobic interactions along with unusual hydrophobic intrastrand interactions of nucleobases with their backbone. These results reveal how a minimal nucleic acid backbone can support highly stable Watson−Crick-like duplex formation. American Chemical Society 2008-06-05 2008-07-02 /pmc/articles/PMC2816004/ /pubmed/18529005 http://dx.doi.org/10.1021/ja802788g Text en Copyright © 2008 American Chemical Society http://pubs.acs.org This is an open-access article distributed under the ACS AuthorChoice Terms & Conditions. Any use of this article, must conform to the terms of that license which are available at http://pubs.acs.org.
spellingShingle Schlegel, Mark K.
Essen, Lars-Oliver
Meggers, Eric
Duplex Structure of a Minimal Nucleic Acid
title Duplex Structure of a Minimal Nucleic Acid
title_full Duplex Structure of a Minimal Nucleic Acid
title_fullStr Duplex Structure of a Minimal Nucleic Acid
title_full_unstemmed Duplex Structure of a Minimal Nucleic Acid
title_short Duplex Structure of a Minimal Nucleic Acid
title_sort duplex structure of a minimal nucleic acid
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2816004/
https://www.ncbi.nlm.nih.gov/pubmed/18529005
http://dx.doi.org/10.1021/ja802788g
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