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Duplex Structure of a Minimal Nucleic Acid
[Image: see text] The crystal structure of an 8-mer (S)-GNA duplex is presented. As a tool for phasing, the anomalous diffraction of two copper(II) ions within two artificial metallo-base pairs was employed. The duplex structure confirms a canonical Watson−Crick base pairing scheme of GNA with antip...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
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American Chemical Society
2008
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2816004/ https://www.ncbi.nlm.nih.gov/pubmed/18529005 http://dx.doi.org/10.1021/ja802788g |
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author | Schlegel, Mark K. Essen, Lars-Oliver Meggers, Eric |
author_facet | Schlegel, Mark K. Essen, Lars-Oliver Meggers, Eric |
author_sort | Schlegel, Mark K. |
collection | PubMed |
description | [Image: see text] The crystal structure of an 8-mer (S)-GNA duplex is presented. As a tool for phasing, the anomalous diffraction of two copper(II) ions within two artificial metallo-base pairs was employed. The duplex structure confirms a canonical Watson−Crick base pairing scheme of GNA with antiparallel strands. The duplex secondary structure is distinct from canonical A- and B-form nucleic acids and can be described as a right-handed helical ribbon wrapped around the helix axis, resulting in a large hollow core. Most intriguingly, neighboring base pairs slide strongly against each other, resulting in extensive interstrand base−base hydrophobic interactions along with unusual hydrophobic intrastrand interactions of nucleobases with their backbone. These results reveal how a minimal nucleic acid backbone can support highly stable Watson−Crick-like duplex formation. |
format | Text |
id | pubmed-2816004 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-28160042010-02-03 Duplex Structure of a Minimal Nucleic Acid Schlegel, Mark K. Essen, Lars-Oliver Meggers, Eric J Am Chem Soc [Image: see text] The crystal structure of an 8-mer (S)-GNA duplex is presented. As a tool for phasing, the anomalous diffraction of two copper(II) ions within two artificial metallo-base pairs was employed. The duplex structure confirms a canonical Watson−Crick base pairing scheme of GNA with antiparallel strands. The duplex secondary structure is distinct from canonical A- and B-form nucleic acids and can be described as a right-handed helical ribbon wrapped around the helix axis, resulting in a large hollow core. Most intriguingly, neighboring base pairs slide strongly against each other, resulting in extensive interstrand base−base hydrophobic interactions along with unusual hydrophobic intrastrand interactions of nucleobases with their backbone. These results reveal how a minimal nucleic acid backbone can support highly stable Watson−Crick-like duplex formation. American Chemical Society 2008-06-05 2008-07-02 /pmc/articles/PMC2816004/ /pubmed/18529005 http://dx.doi.org/10.1021/ja802788g Text en Copyright © 2008 American Chemical Society http://pubs.acs.org This is an open-access article distributed under the ACS AuthorChoice Terms & Conditions. Any use of this article, must conform to the terms of that license which are available at http://pubs.acs.org. |
spellingShingle | Schlegel, Mark K. Essen, Lars-Oliver Meggers, Eric Duplex Structure of a Minimal Nucleic Acid |
title | Duplex Structure of a Minimal Nucleic Acid |
title_full | Duplex Structure of a Minimal Nucleic Acid |
title_fullStr | Duplex Structure of a Minimal Nucleic Acid |
title_full_unstemmed | Duplex Structure of a Minimal Nucleic Acid |
title_short | Duplex Structure of a Minimal Nucleic Acid |
title_sort | duplex structure of a minimal nucleic acid |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2816004/ https://www.ncbi.nlm.nih.gov/pubmed/18529005 http://dx.doi.org/10.1021/ja802788g |
work_keys_str_mv | AT schlegelmarkk duplexstructureofaminimalnucleicacid AT essenlarsoliver duplexstructureofaminimalnucleicacid AT meggerseric duplexstructureofaminimalnucleicacid |