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Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma
PURPOSE: To investigate the association and ethnic heterogeneity of lysyl oxidase-like 1 (LOXL1) single nucleotide polymorphisms (SNPs) with exfoliation syndrome (XFS)/exfoliation glaucoma (XFG) and other types of glaucoma. METHODS: We performed meta-analysis and ethnicity-based subgroup analyses ac...
Autores principales: | , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Molecular Vision
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2817013/ https://www.ncbi.nlm.nih.gov/pubmed/20142848 |
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author | Chen, Haoyu Chen, Li Jia Zhang, Mingzhi Gong, Weifeng Tam, Pancy Oi Sin Lam, Dennis Shun Chiu Pang, Chi Pui |
author_facet | Chen, Haoyu Chen, Li Jia Zhang, Mingzhi Gong, Weifeng Tam, Pancy Oi Sin Lam, Dennis Shun Chiu Pang, Chi Pui |
author_sort | Chen, Haoyu |
collection | PubMed |
description | PURPOSE: To investigate the association and ethnic heterogeneity of lysyl oxidase-like 1 (LOXL1) single nucleotide polymorphisms (SNPs) with exfoliation syndrome (XFS)/exfoliation glaucoma (XFG) and other types of glaucoma. METHODS: We performed meta-analysis and ethnicity-based subgroup analyses according to published studies. Allele and genotype frequencies of SNPs rs1048661, rs2165241, and rs3825942 were extracted for analysis in Reviewer Manager: (1) comparison of the allelic distributions between XFS and XFG, (2) allelic association of LOXL1 SNPs with XFS/XFG, (3) associations in homozygote, heterozygote, and dominant and recessive models, and (4) allelic association with primary open angle glaucoma (POAG). RESULTS: In total 24 reported articles were retrieved, including Caucasian, African, Japanese, Indian, and Chinese populations. There was no significant difference in the distributions of rs1048661, rs2165241, and rs3825942 between XFS and XFG. The G allele of rs3825942 was the common at-risk allele for XFS/XFG in all populations with a total odds ratio (OR) of 10.89. The total homozygote OR of rs3825942 was 9.06 for XFS/XFG combined, but the total heterozygote OR was not significant. We also found that in the recessive model, the total OR was 14.70. There was no association of the three SNPs with POAG. CONCLUSIONS: The association of rs3825942, but not rs2165241 or rs1048661, with XFS/XFG is consistent in different ethnic populations in the recessive model. LOXL1 is not associated with POAG in all study populations. |
format | Text |
id | pubmed-2817013 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Molecular Vision |
record_format | MEDLINE/PubMed |
spelling | pubmed-28170132010-02-08 Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma Chen, Haoyu Chen, Li Jia Zhang, Mingzhi Gong, Weifeng Tam, Pancy Oi Sin Lam, Dennis Shun Chiu Pang, Chi Pui Mol Vis Research Article PURPOSE: To investigate the association and ethnic heterogeneity of lysyl oxidase-like 1 (LOXL1) single nucleotide polymorphisms (SNPs) with exfoliation syndrome (XFS)/exfoliation glaucoma (XFG) and other types of glaucoma. METHODS: We performed meta-analysis and ethnicity-based subgroup analyses according to published studies. Allele and genotype frequencies of SNPs rs1048661, rs2165241, and rs3825942 were extracted for analysis in Reviewer Manager: (1) comparison of the allelic distributions between XFS and XFG, (2) allelic association of LOXL1 SNPs with XFS/XFG, (3) associations in homozygote, heterozygote, and dominant and recessive models, and (4) allelic association with primary open angle glaucoma (POAG). RESULTS: In total 24 reported articles were retrieved, including Caucasian, African, Japanese, Indian, and Chinese populations. There was no significant difference in the distributions of rs1048661, rs2165241, and rs3825942 between XFS and XFG. The G allele of rs3825942 was the common at-risk allele for XFS/XFG in all populations with a total odds ratio (OR) of 10.89. The total homozygote OR of rs3825942 was 9.06 for XFS/XFG combined, but the total heterozygote OR was not significant. We also found that in the recessive model, the total OR was 14.70. There was no association of the three SNPs with POAG. CONCLUSIONS: The association of rs3825942, but not rs2165241 or rs1048661, with XFS/XFG is consistent in different ethnic populations in the recessive model. LOXL1 is not associated with POAG in all study populations. Molecular Vision 2010-02-06 /pmc/articles/PMC2817013/ /pubmed/20142848 Text en Copyright © 2010 Molecular Vision. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Chen, Haoyu Chen, Li Jia Zhang, Mingzhi Gong, Weifeng Tam, Pancy Oi Sin Lam, Dennis Shun Chiu Pang, Chi Pui Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma |
title | Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma |
title_full | Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma |
title_fullStr | Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma |
title_full_unstemmed | Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma |
title_short | Ethnicity-based subgroup meta-analysis of the association of LOXL1 polymorphisms with glaucoma |
title_sort | ethnicity-based subgroup meta-analysis of the association of loxl1 polymorphisms with glaucoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2817013/ https://www.ncbi.nlm.nih.gov/pubmed/20142848 |
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