Cargando…

Ensemble Fractional Sensitivity: A Quantitative Approach to Neuron Selection for Decoding Motor Tasks

A robust method to help identify the population of neurons used for decoding motor tasks is developed. We use sensitivity analysis to develop a new metric for quantifying the relative contribution of a neuron towards the decoded output, called “fractional sensitivity.” Previous model-based approache...

Descripción completa

Detalles Bibliográficos
Autores principales: Singhal, Girish, Aggarwal, Vikram, Acharya, Soumyadipta, Aguayo, Jose, He, Jiping, Thakor, Nitish
Formato: Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2821779/
https://www.ncbi.nlm.nih.gov/pubmed/20169103
http://dx.doi.org/10.1155/2010/648202
_version_ 1782177469029154816
author Singhal, Girish
Aggarwal, Vikram
Acharya, Soumyadipta
Aguayo, Jose
He, Jiping
Thakor, Nitish
author_facet Singhal, Girish
Aggarwal, Vikram
Acharya, Soumyadipta
Aguayo, Jose
He, Jiping
Thakor, Nitish
author_sort Singhal, Girish
collection PubMed
description A robust method to help identify the population of neurons used for decoding motor tasks is developed. We use sensitivity analysis to develop a new metric for quantifying the relative contribution of a neuron towards the decoded output, called “fractional sensitivity.” Previous model-based approaches for neuron ranking have been shown to largely depend on the collection of training data. We suggest the use of an ensemble of models that are trained on random subsets of trials to rank neurons. For this work, we tested a decoding algorithm on neuronal data recorded from two male rhesus monkeys while they performed a reach to grasp a bar at three orientations (45°, 90°, or 135°). An ensemble approach led to a statistically significant increase of 5% in decoding accuracy and 25% increase in identification accuracy of simulated noisy neurons, when compared to a single model. Furthermore, ranking neurons based on the ensemble fractional sensitivities resulted in decoding accuracies 10%–20% greater than when randomly selecting neurons or ranking based on firing rates alone. By systematically reducing the size of the input space, we determine the optimal number of neurons needed for decoding the motor output. This selection approach has practical benefits for other BMI applications where limited number of electrodes and training datasets are available, but high decoding accuracies are desirable.
format Text
id pubmed-2821779
institution National Center for Biotechnology Information
language English
publishDate 2010
publisher Hindawi Publishing Corporation
record_format MEDLINE/PubMed
spelling pubmed-28217792010-02-18 Ensemble Fractional Sensitivity: A Quantitative Approach to Neuron Selection for Decoding Motor Tasks Singhal, Girish Aggarwal, Vikram Acharya, Soumyadipta Aguayo, Jose He, Jiping Thakor, Nitish Comput Intell Neurosci Research Article A robust method to help identify the population of neurons used for decoding motor tasks is developed. We use sensitivity analysis to develop a new metric for quantifying the relative contribution of a neuron towards the decoded output, called “fractional sensitivity.” Previous model-based approaches for neuron ranking have been shown to largely depend on the collection of training data. We suggest the use of an ensemble of models that are trained on random subsets of trials to rank neurons. For this work, we tested a decoding algorithm on neuronal data recorded from two male rhesus monkeys while they performed a reach to grasp a bar at three orientations (45°, 90°, or 135°). An ensemble approach led to a statistically significant increase of 5% in decoding accuracy and 25% increase in identification accuracy of simulated noisy neurons, when compared to a single model. Furthermore, ranking neurons based on the ensemble fractional sensitivities resulted in decoding accuracies 10%–20% greater than when randomly selecting neurons or ranking based on firing rates alone. By systematically reducing the size of the input space, we determine the optimal number of neurons needed for decoding the motor output. This selection approach has practical benefits for other BMI applications where limited number of electrodes and training datasets are available, but high decoding accuracies are desirable. Hindawi Publishing Corporation 2010 2010-02-14 /pmc/articles/PMC2821779/ /pubmed/20169103 http://dx.doi.org/10.1155/2010/648202 Text en Copyright © 2010 Girish Singhal et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Singhal, Girish
Aggarwal, Vikram
Acharya, Soumyadipta
Aguayo, Jose
He, Jiping
Thakor, Nitish
Ensemble Fractional Sensitivity: A Quantitative Approach to Neuron Selection for Decoding Motor Tasks
title Ensemble Fractional Sensitivity: A Quantitative Approach to Neuron Selection for Decoding Motor Tasks
title_full Ensemble Fractional Sensitivity: A Quantitative Approach to Neuron Selection for Decoding Motor Tasks
title_fullStr Ensemble Fractional Sensitivity: A Quantitative Approach to Neuron Selection for Decoding Motor Tasks
title_full_unstemmed Ensemble Fractional Sensitivity: A Quantitative Approach to Neuron Selection for Decoding Motor Tasks
title_short Ensemble Fractional Sensitivity: A Quantitative Approach to Neuron Selection for Decoding Motor Tasks
title_sort ensemble fractional sensitivity: a quantitative approach to neuron selection for decoding motor tasks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2821779/
https://www.ncbi.nlm.nih.gov/pubmed/20169103
http://dx.doi.org/10.1155/2010/648202
work_keys_str_mv AT singhalgirish ensemblefractionalsensitivityaquantitativeapproachtoneuronselectionfordecodingmotortasks
AT aggarwalvikram ensemblefractionalsensitivityaquantitativeapproachtoneuronselectionfordecodingmotortasks
AT acharyasoumyadipta ensemblefractionalsensitivityaquantitativeapproachtoneuronselectionfordecodingmotortasks
AT aguayojose ensemblefractionalsensitivityaquantitativeapproachtoneuronselectionfordecodingmotortasks
AT hejiping ensemblefractionalsensitivityaquantitativeapproachtoneuronselectionfordecodingmotortasks
AT thakornitish ensemblefractionalsensitivityaquantitativeapproachtoneuronselectionfordecodingmotortasks